Jatropha Genome Database

JcCB0284841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284841.10 + phase: 0 /partial
         (88 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g124680.1 ABC-1 chr04_pseudomolecule_IMGAG_V3 2924156...   123   2e-29

>IMGA|Medtr4g124680.1 ABC-1 chr04_pseudomolecule_IMGAG_V3
           29241568-29233626 E EGN_Mt090430 20090702
          Length = 630

 Score =  123 bits (309), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 70/91 (76%), Gaps = 3/91 (3%)

Query: 1   EVENCYNSW--RSPNEVNPAECIQQLLEHVRRHKVNIDGDICIVMVTTLVLEGWQQKLDP 58
           EVE  +  W  R  + V+PAEC++QLLE VRRH+VNIDG++C VMVTTLVLEGWQ+KLDP
Sbjct: 540 EVEKAFTFWGTREGDAVHPAECMEQLLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDP 599

Query: 59  EYNV-SALQSLLFKVDYADSLCYTIEGLMAP 88
            YNV   LQ+LL + D+A S  YTI+ LMAP
Sbjct: 600 GYNVMETLQTLLLRADWAKSFAYTIQSLMAP 630