Jatropha Genome Database

JcCB0284451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.20 - phase: 0 /partial
         (80 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g110980.1 Double-stranded RNA binding chr03_pseudomol...    84   1e-17
IMGA|Medtr7g140190.1 Double-stranded RNA binding chr07_pseudomol...    74   2e-14
IMGA|Medtr3g110940.1 Double-stranded RNA binding chr03_pseudomol...    73   3e-14
IMGA|Medtr3g110860.1 Double-stranded RNA binding chr03_pseudomol...    72   6e-14
IMGA|Medtr6g092600.1 Double-stranded RNA binding chr06_pseudomol...    71   1e-13
IMGA|Medtr2g110220.1 Double-stranded RNA binding chr02_pseudomol...    69   4e-13
IMGA|Medtr3g110900.1 Double-stranded RNA binding chr03_pseudomol...    65   6e-12
IMGA|Medtr3g149610.1 Double-stranded RNA binding chr03_pseudomol...    55   8e-09
IMGA|Medtr3g113560.1 Double-stranded RNA binding chr03_pseudomol...    54   2e-08
IMGA|Medtr3g110890.1 Double-stranded RNA binding chr03_pseudomol...    50   4e-07

>IMGA|Medtr3g110980.1 Double-stranded RNA binding
          chr03_pseudomolecule_IMGAG_V3 28036419-28035926 H
          EGN_Mt090430 20090702
          Length = 87

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          M+KTKLQ+LCHQ+ W+LP Y  T +GP H P F  +V VNG++F S   F S+K AQN A
Sbjct: 1  MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60

Query: 61 AKVAFDHFST 70
          A  AF +F++
Sbjct: 61 AMKAFRNFTS 70


>IMGA|Medtr7g140190.1 Double-stranded RNA binding
          chr07_pseudomolecule_IMGAG_V3 33703453-33700536 E
          EGN_Mt090430 20090702
          Length = 505

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 48/72 (66%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  +NLP+Y   +EGPDH PRF+VTV  NG +F S +   + + A++ A
Sbjct: 1  MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA +  +T G
Sbjct: 61 AEVALNTLATRG 72



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK  LQE  H+   NLP Y T + GP H P F  TV + G+ F +  P R+ K AQ +A
Sbjct: 87  VYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFYCTVEIAGMHF-TGDPARTKKQAQKNA 145

Query: 61  AKVAFDHF 68
           A  A+   
Sbjct: 146 AIAAWSAL 153


>IMGA|Medtr3g110940.1 Double-stranded RNA binding
          chr03_pseudomolecule_IMGAG_V3 28031612-28029426 H
          EGN_Mt090430 20090702
          Length = 372

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTT-KEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQND 59
          M+K+KLQELCH++ W+LP Y     +GP H+P F+ +V VNGL+F S   F SS  AQN 
Sbjct: 1  MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60

Query: 60 AAKVAFDHFST 70
          AA  AF +F++
Sbjct: 61 AAMKAFRNFTS 71



 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 3   KTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDAAK 62
           K+ LQEL  ++ ++ P+Y TT+ GP H P F  TV V G+ FH ++  +S   A+ DAAK
Sbjct: 182 KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGKA-SKSKNKAEEDAAK 240

Query: 63  VAF 65
           +A+
Sbjct: 241 IAY 243


>IMGA|Medtr3g110860.1 Double-stranded RNA binding
           chr03_pseudomolecule_IMGAG_V3 28009087-28006287 H
           EGN_Mt090430 20090702
          Length = 422

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTT-KEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQND 59
           MYK++LQE CH++ W+LP Y +   +GP H+P F+ +V VNGL+F S   F SSK A N 
Sbjct: 33  MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92

Query: 60  AAKVAFDHFS 69
           AA  A  +FS
Sbjct: 93  AAMKALLNFS 102



 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 3   KTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDAAK 62
           K+ LQEL  ++  ++P+Y +T+ GP H P F  TV V G+ FH ++   S K A+ DAAK
Sbjct: 224 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKAS-SSKKEAEYDAAK 282

Query: 63  VAFDHFSTGG 72
           +A+     GG
Sbjct: 283 IAYKALKDGG 292


>IMGA|Medtr6g092600.1 Double-stranded RNA binding
          chr06_pseudomolecule_IMGAG_V3 19503552-19503779 E
          EGN_Mt090430 20090702
          Length = 75

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 41/68 (60%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MY  KLQELC +  + LP Y TT EGP H+P F  TVTV  +SF S  P  + K +Q   
Sbjct: 1  MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60

Query: 61 AKVAFDHF 68
          A VAF HF
Sbjct: 61 AMVAFHHF 68


>IMGA|Medtr2g110220.1 Double-stranded RNA binding
          chr02_pseudomolecule_IMGAG_V3 25841526-25839968 E
          EGN_Mt090430 20090702
          Length = 149

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          MYK +LQEL  +  +NLPSY   +EGPDH PRF+ TV  NG  F S     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61 AKVAFDHFSTGG 72
          A+VA +  S  G
Sbjct: 61 AEVALNSLSHRG 72


>IMGA|Medtr3g110900.1 Double-stranded RNA binding
          chr03_pseudomolecule_IMGAG_V3 28019178-28016166 H
          EGN_Mt090430 20090702
          Length = 283

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTK-EGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQND 59
          M K +LQELCHQ+ W+LP Y     +GP H P F+ +V VNGL+F S + F SSK A N 
Sbjct: 1  MNKMRLQELCHQRKWSLPKYSALNVDGPPHKPSFKGSVFVNGLTFTSDA-FHSSKEAHNQ 59

Query: 60 AAKVAFDHF 68
          AA  A  +F
Sbjct: 60 AALKALLNF 68



 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 2   YKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDAA 61
           YK+ LQEL  +K ++ P+Y TT+ G  H P F   V V G+ FH  +  RS K A+ DAA
Sbjct: 175 YKSLLQELTQKKGFSKPTYKTTQTGSLHMPTFFSAVEVEGVEFHGNAS-RSKKEAERDAA 233

Query: 62  KVAFDHFSTG 71
           K+A+     G
Sbjct: 234 KIAYKAIKDG 243


>IMGA|Medtr3g149610.1 Double-stranded RNA binding
          chr03_pseudomolecule_IMGAG_V3 39183638-39187521 E
          EGN_Mt090430 20090702
          Length = 660

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query: 1  MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
          ++K++LQE   +     P Y+TTKEGP H+P FR TV +N + + S + F + K A+  A
Sbjct: 16 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 75

Query: 61 AKVAFDHFSTGG 72
          A+VA    +  G
Sbjct: 76 AEVALMELAKTG 87


>IMGA|Medtr3g113560.1 Double-stranded RNA binding
           chr03_pseudomolecule_IMGAG_V3 28547757-28549799 H
           EGN_Mt090430 20090702
          Length = 343

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 42/69 (60%)

Query: 1   MYKTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDA 60
           +YK+KLQ+   +  + +P+Y +  EG  H  +FR  VT+ G++ + Q  +   K A+ + 
Sbjct: 43  VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEI 102

Query: 61  AKVAFDHFS 69
           AK+A ++F+
Sbjct: 103 AKIALEYFT 111


>IMGA|Medtr3g110890.1 Double-stranded RNA binding
           chr03_pseudomolecule_IMGAG_V3 28015357-28013391 H
           EGN_Mt090430 20090702
          Length = 346

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 3   KTKLQELCHQKIWNLPSYDTTKEGPDHDPRFRVTVTVNGLSFHSQSPFRSSKHAQNDAAK 62
           K+ L EL  ++ ++ P+Y TT+ G  H P +  TV V GL FH ++  RS K A  DAAK
Sbjct: 130 KSLLLELTQREGYSKPTYMTTESGSPHMPTYYSTVEVEGLKFHGKAS-RSKKQADIDAAK 188

Query: 63  VAFDHFSTGG 72
           +A+      G
Sbjct: 189 IAYIALKECG 198