Jatropha Genome Database

JcCB0284451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284451.10 + phase: 2 /pseudo/partial
         (149 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g137910.1 Amino acid/polyamine transporter I chr04_ps...    58   1e-09
IMGA|Medtr4g137890.1 Amino acid/polyamine transporter I chr04_ps...    54   4e-08
IMGA|AC233577_6.1 Amino acid permease-associated region AC233577...    50   4e-07
IMGA|Medtr4g137900.1 Amino acid/polyamine transporter I chr04_ps...    49   7e-07

>IMGA|Medtr4g137910.1 Amino acid/polyamine transporter I
           chr04_pseudomolecule_IMGAG_V3 34078658-34082006 E
           EGN_Mt090430 20090702
          Length = 599

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI +NIFLLGSID  S+ RFGIW+          GLHA+YDA+
Sbjct: 526 WLPSFSIAINIFLLGSIDKDSYVRFGIWSGILLIYYFLIGLHASYDAS 573


>IMGA|Medtr4g137890.1 Amino acid/polyamine transporter I
           chr04_pseudomolecule_IMGAG_V3 34058332-34055102 E
           EGN_Mt090430 20090702
          Length = 604

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 31/48 (64%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI +NIFLLGSID KS+ RF IWT          GLHA+YD A
Sbjct: 522 WLPSLSIAINIFLLGSIDRKSYIRFAIWTGFLLVYYVLLGLHASYDTA 569


>IMGA|AC233577_6.1 Amino acid permease-associated region AC233577.5
           33201-36915 E EGN_Mt090430 20090702
          Length = 560

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDA 120
           WIP  SI LN+FLLGS+D  S+ RFG+++           +HA++DA
Sbjct: 487 WIPAISIFLNLFLLGSLDGPSYVRFGVFSAVAVLFYIFYSVHASFDA 533


>IMGA|Medtr4g137900.1 Amino acid/polyamine transporter I
           chr04_pseudomolecule_IMGAG_V3 34072165-34063156 E
           EGN_Mt090430 20090702
          Length = 628

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 31/48 (64%)

Query: 74  WIPPASIILNIFLLGSIDAKSFERFGIWTXXXXXXXXXXGLHATYDAA 121
           W+P  SI +NIFLLG+ID KS+ RF IWT          GLHA+YD A
Sbjct: 542 WLPSLSIAINIFLLGTIDKKSYIRFTIWTGFLLVYYVLLGLHASYDTA 589