Jatropha Genome Database

JcCB0284041.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0284041.20 + phase: 0 /TE/partial
         (149 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g065530.1 pol, putative chr01_pseudomolecule_IMGAG_V3...    79   1e-15
IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H...    58   2e-09
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc...    56   7e-09

>IMGA|Medtr1g065530.1 pol, putative chr01_pseudomolecule_IMGAG_V3
           13044999-13045410 H EGN_Mt090430 20090702
          Length = 93

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%)

Query: 48  LHAYENAKIYKDRTKQWHDKRIITRDLKVGQQVLLYNSRLRLFPSKLRSRWSGPFTIKEI 107
           +  YEN KIYK + K+WHD  I  R+L+VG++VLL+NSRL+LF  KL+S+W GP  I ++
Sbjct: 1   MCVYENTKIYKSKVKKWHDAIIQKRELEVGEKVLLFNSRLKLFSRKLQSKWYGPIVITKV 60

Query: 108 FPHGAI 113
            P   +
Sbjct: 61  SPTAVV 66


>IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr06_pseudomolecule_IMGAG_V3 15275871-15277296 E
           EGN_Mt090430 20090702
          Length = 445

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)

Query: 2   VLYGKACHLPVELEHKAFWAIQFFNFNAKEVGQKRLLQLNMMDEMRLHAYENAKIYKDRT 61
           ++YG    LP+E+E  +   I     +  E  Q R  QLN+++E R+ A    + Y+ R 
Sbjct: 306 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARM 365

Query: 62  KQWHDKRIITRDLKVGQQVLLYNSRLRLFPSKLRSRWS----GPFTIKEIFPHGAI 113
           K   DK++  R+ KVG+ VL    R+   P   R +W+    GP+ +K+ F  GA+
Sbjct: 366 KTAFDKKVHPREFKVGELVL--KRRVSQQPDP-RGKWTPNYEGPYVVKKAFSGGAL 418


>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
            transcriptase); Ribonuclease H
            chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
            EGN_Mt090430 20090702
          Length = 1200

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 2    VLYGKACHLPVELEHKAFWAIQFFNFNAKEVGQKRLLQLNMMDEMRLHAYENAKIYKDRT 61
            ++YG    LP+E+E  +   I     +  E  Q R  QLN+++E R+ A    + Y+ R 
Sbjct: 1008 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARM 1067

Query: 62   KQWHDKRIITRDLKVGQQVLLYNSRLRLFPSKLRSRWS----GPFTIKEIFPHG 111
            K   DK++  R+ KVG+ VL    R+   P   R +W+    GP+ +K+ F  G
Sbjct: 1068 KTAFDKKVHPREFKVGELVL--KRRVSQQPDP-RDKWTPNYEGPYVVKKAFSGG 1118