Jatropha Genome Database

JcCB0282311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0282311.10 + phase: 0 
         (97 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g013830.1 Blue (type 1) copper domain chr06_pseudomol...    68   1e-12
IMGA|Medtr6g013660.1 Blue (type 1) copper domain chr06_pseudomol...    63   4e-11

>IMGA|Medtr6g013830.1 Blue (type 1) copper domain
          chr06_pseudomolecule_IMGAG_V3 3053659-3050824 F
          EGN_Mt090430 20090702
          Length = 179

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 6/69 (8%)

Query: 1  MDGTRRGCGFRSSMMVPVAVVILMVF----MVPEVSATRWTVGSNMGWTTNVNYTIWAQD 56
          M+G ++     +S + P  V +L+ F    M+P VSATR+ VG  MGW TN NYT WA+ 
Sbjct: 1  MEGRKKRV--FASTISPTMVFLLLGFAVLVMLPMVSATRFMVGGRMGWNTNFNYTTWAKG 58

Query: 57 KHFYNGDWL 65
          KHFYNGDWL
Sbjct: 59 KHFYNGDWL 67


>IMGA|Medtr6g013660.1 Blue (type 1) copper domain
          chr06_pseudomolecule_IMGAG_V3 2963523-2962668 E
          EGN_Mt090430 20090702
          Length = 150

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 1  MDGTRRGCGFRSSMMVPVAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFY 60
          M G +       +MM+ + V  ++V M+P  SA RW VG   GWTTN+NY+ W +  +FY
Sbjct: 1  MKGIKLLVSMSQAMMILLLVCTVLV-MLPVASAKRWIVGDKKGWTTNINYSTWIEGNNFY 59

Query: 61 NGDWL 65
          NGDWL
Sbjct: 60 NGDWL 64