Jatropha Genome Database
- JcCB0281811.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0281811.20 + phase: 0
(118 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g121660.1 Mitochondrial ATP synthase g subunit chr02_... 161 8e-41
IMGA|Medtr4g160610.1 Mitochondrial ATP synthase g subunit chr04_... 160 2e-40
IMGA|Medtr4g160620.1 Mitochondrial ATP synthase g subunit chr04_... 155 3e-39
IMGA|Medtr5g071970.1 Mitochondrial ATP synthase g subunit; Vps52... 78 1e-15
>IMGA|Medtr2g121660.1 Mitochondrial ATP synthase g subunit
chr02_pseudomolecule_IMGAG_V3 28913824-28915060 H
EGN_Mt090430 20090702
Length = 217
Score = 161 bits (407), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 93/122 (76%), Gaps = 4/122 (3%)
Query: 1 MASKLPQLQSKLHSA----AKHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
M SK+P+LQSK A A H + +K L+E NK ++Q PPT+E+CQ LA QL +TRLA
Sbjct: 96 MTSKIPELQSKATQASAEVANHINSHFKLLMERNKHHVQEPPTIEKCQSLAKQLFYTRLA 155
Query: 57 SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
SIP+RY++FWKEL+ KN+M + E+N+EK G ALFG+EC+ W+ GGEI+GRGFTFTGY
Sbjct: 156 SIPHRYDSFWKELDSAKNIMNNMNELNMEKIGTAALFGLECYLWYCGGEIVGRGFTFTGY 215
Query: 117 YV 118
YV
Sbjct: 216 YV 217
>IMGA|Medtr4g160610.1 Mitochondrial ATP synthase g subunit
chr04_pseudomolecule_IMGAG_V3 40743352-40739298 E
EGN_Mt090430 20090702
Length = 122
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 96/122 (78%), Gaps = 4/122 (3%)
Query: 1 MASKLPQLQSKLHSAA----KHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLA 56
MASKL LQSK A+ KHG +YKQLLE+NKQYIQ P T+E+C LLA QLL+TRLA
Sbjct: 1 MASKLKALQSKACQASQLISKHGSGYYKQLLEQNKQYIQEPATIEKCNLLAKQLLYTRLA 60
Query: 57 SIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGY 116
SIP R EAFWKEL+ +K+L +++ ++ +E AG+ ALFG+EC+AW+ GEI+GRGFTFTGY
Sbjct: 61 SIPVRCEAFWKELDYVKHLWRNRQDLKVEDAGIAALFGLECYAWYCAGEIVGRGFTFTGY 120
Query: 117 YV 118
V
Sbjct: 121 SV 122
>IMGA|Medtr4g160620.1 Mitochondrial ATP synthase g subunit
chr04_pseudomolecule_IMGAG_V3 40747713-40744393 E
EGN_Mt090430 20090702
Length = 121
Score = 155 bits (393), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 95/120 (79%), Gaps = 4/120 (3%)
Query: 3 SKLPQLQSKLHSAA----KHGCAFYKQLLEENKQYIQNPPTVERCQLLANQLLFTRLASI 58
SKL QL SK+ A+ KHG +++KQLLE+NK+YIQ P TVE+CQLLA QL +TRLASI
Sbjct: 2 SKLQQLTSKVCQASQFITKHGTSYHKQLLEKNKEYIQEPATVEKCQLLAKQLFYTRLASI 61
Query: 59 PNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGEIIGRGFTFTGYYV 118
PNR E+F KEL+ +K + K+K ++ IE AG+ LFG+EC+AWF G+I+GRGFTFTGYYV
Sbjct: 62 PNRCESFHKELDYVKQIWKNKQDLKIEDAGIAVLFGLECYAWFCAGQIVGRGFTFTGYYV 121
>IMGA|Medtr5g071970.1 Mitochondrial ATP synthase g subunit;
Vps52/Sac2 chr05_pseudomolecule_IMGAG_V3
25569822-25570986 E EGN_Mt090430 20090702
Length = 115
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 46 LANQLLFTRLASIPNRYEAFWKELEGLKNLMKSKPEMNIEKAGLVALFGVECFAWFWGGE 105
LA Q L IP R EAFWKEL K+L +++ ++ +E AG+ ALFG+E +AW+ GE
Sbjct: 43 LAAQFLCRSPVLIPVRCEAFWKELHYFKHLWRNRQDLKVEDAGIAALFGLEYYAWYCAGE 102
Query: 106 IIGRGFTFTGY 116
I+G+GFTF GY
Sbjct: 103 IVGKGFTFPGY 113