Jatropha Genome Database

JcCB0280701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0280701.10 + phase: 0 
         (229 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g064910.1 Pantoate-beta-alanine ligase chr07_pseudomo...   284   2e-77

>IMGA|Medtr7g064910.1 Pantoate-beta-alanine ligase
           chr07_pseudomolecule_IMGAG_V3 13220032-13219122 E
           EGN_Mt090430 20090702
          Length = 216

 Score =  284 bits (727), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/198 (70%), Positives = 162/198 (81%), Gaps = 6/198 (3%)

Query: 2   EPEIITDKTQMRNWSRAIRSQGKTIALVPTMGYLHHGHLSLVEEAKKLANVIVVSIYLNP 61
           EP II DKTQMRNWSR +RSQ K IALVPTMGYLH GHLSL+ +A K AN+IVVSIY+NP
Sbjct: 5   EPIIIRDKTQMRNWSRTMRSQSKLIALVPTMGYLHQGHLSLITQAHKHANLIVVSIYVNP 64

Query: 62  GQFSPSEDLSTYPSDFNGDIMKLMSVPGGVNAVFHPQNLYDYEIDRKNENYNVNFRDSGD 121
           GQFSP+EDLSTYPSDF GD+ KL++VPGGV+ VF+P+NLYDY     + +      D   
Sbjct: 65  GQFSPNEDLSTYPSDFQGDLKKLINVPGGVDVVFNPKNLYDYGGSDGDGDDGGEKGDG-- 122

Query: 122 NCKGVVSCVEEKGLGHETWVRVQRLEKGLCGKSRPVFFRGVATVVTKLFNIVEPDFAVFG 181
               VVSCVE+ G GHE+WVRV+RLEKGLCG SRP+FFRGVAT+VTKLFNIVEPDFAVFG
Sbjct: 123 ----VVSCVEKSGFGHESWVRVERLEKGLCGMSRPIFFRGVATIVTKLFNIVEPDFAVFG 178

Query: 182 KKDYQQWRIIQRMVRIEI 199
           KKDYQQWR+IQRM  I++
Sbjct: 179 KKDYQQWRVIQRMGPIQL 196