Jatropha Genome Database

JcCB0279751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279751.10 - phase: 0 
         (237 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g083490.1 Protein of unknown function UPF0044 chr07_p...   224   3e-59
IMGA|Medtr4g159520.1 Protein of unknown function UPF0044 chr04_p...    63   1e-10

>IMGA|Medtr7g083490.1 Protein of unknown function UPF0044
           chr07_pseudomolecule_IMGAG_V3 17844639-17840971 H
           EGN_Mt090430 20090702
          Length = 407

 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/205 (62%), Positives = 148/205 (72%), Gaps = 19/205 (9%)

Query: 1   MSLLARLSRQKXXXXXXXXXXXXARHLSSASTSS-----KLHDHYAFRPPPSLSPQEPDN 55
           MS+L  L+RQ              RHLSSA+ ++     KLHD Y F PPPSLSP  P N
Sbjct: 1   MSVLKNLTRQNLSL---------TRHLSSAAIATTTTASKLHDRYTFEPPPSLSPT-PQN 50

Query: 56  PNPT----TRKKQKPLYRPPSTLDRTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPKY 111
           PN T     RK  KP Y+PPS+LDRTGKKP  S LPFDFR+SYTESSQ+VRPIGLREPKY
Sbjct: 51  PNSTPPKPHRKTPKPKYKPPSSLDRTGKKPIRSTLPFDFRFSYTESSQTVRPIGLREPKY 110

Query: 112 SPFGPDRLDRSWTGVCAPAVDPKVKSLDGTDDPNLEEKRKLMREKIQGDPLTNAERKILV 171
           SPFGPDR+DR WTGVCAPAVDPKVK LDG +DP LE++RK  RE +QGD LTNAERK LV
Sbjct: 111 SPFGPDRIDREWTGVCAPAVDPKVKELDGEEDPKLEDERKKKREHVQGDALTNAERKALV 170

Query: 172 AQCQRNKTKRQINLGMVFVLFNLSI 196
            QC+R KTKRQ+N+G   +  N+ I
Sbjct: 171 LQCERGKTKRQVNMGRDGLTHNMLI 195


>IMGA|Medtr4g159520.1 Protein of unknown function UPF0044
           chr04_pseudomolecule_IMGAG_V3 40260003-40255331 E
           EGN_Mt090430 20090702
          Length = 698

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 30/165 (18%)

Query: 61  RKKQKPLYRPPST--LDRTGKKPTHSDLPFDFRYSYTESSQSVRPIGLREPKYSPFGPDR 118
           ++K KP+ + P    +   G        PF+F+YSYTE+ +S +P+ +REP + PFGP  
Sbjct: 51  KQKLKPVNKTPENVKISEDGVSYVIEGAPFEFKYSYTETPKS-KPVQMREPPFVPFGPVT 109

Query: 119 LDRSWTGVCAPAVDPKVKSLDGTDD---------------------PNLEEKRKLMREKI 157
           + R WTG   P + P  K L   D                      P    +  + RE++
Sbjct: 110 MPRPWTG--RPPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFLPGTSPRYVMSREEV 167

Query: 158 QGDPLTNAERKILVAQCQRNKTKRQINLGMVFVLFNLSILGTVYA 202
            G+PLT  E   LV      K+ RQ+NLG    + N+  L  ++A
Sbjct: 168 LGEPLTKEEINELVRSTL--KSSRQLNLGRDGFIHNM--LDNIHA 208