Jatropha Genome Database

JcCB0279151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0279151.10 - phase: 0 
         (69 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g147170.1 localized according to blastn similarity to...    56   4e-09
IMGA|Medtr3g104130.1 localized according to blastn similarity to...    56   5e-09
IMGA|Medtr4g147160.1 localized according to blastn similarity to...    55   7e-09
IMGA|Medtr3g104120.1 localized according to blastn similarity to...    53   4e-08

>IMGA|Medtr4g147170.1 localized according to blastn similarity to
          EST sequences; therefore, the coding span corresponds
          only to an area of similarity since the initation codon
          and stop codon could not be precisely determined,
          putative chr04_pseudomolecule_IMGAG_V3
          36852902-36853310 F EGN_Mt090430 20090702
          Length = 70

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%)

Query: 2  ADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILILA 61
          ADWA                  QLP   R V FGS +T+G +I+VHT+IFF + TI +LA
Sbjct: 3  ADWAPVVVSVVLFVLLSPGLLFQLPAKGRVVAFGSMQTSGLSILVHTIIFFGLVTIFLLA 62

Query: 62 VRVRIYTG 69
          + V IY+G
Sbjct: 63 IGVHIYSG 70


>IMGA|Medtr3g104130.1 localized according to blastn similarity to
          EST sequences; therefore, the coding span corresponds
          only to an area of similarity since the initation codon
          and stop codon could not be precisely determined,
          putative chr03_pseudomolecule_IMGAG_V3
          25790204-25790617 E EGN_Mt090430 20090702
          Length = 69

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query: 1  MADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILIL 60
          MADW                   Q+PG  + VEFG+ +T+G +I+VHT++FF + TI ++
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQMPGRNKVVEFGNMQTSGVSILVHTILFFGLITIFLI 60

Query: 61 AVRVRIYTG 69
          A+ V I TG
Sbjct: 61 AIGVHINTG 69


>IMGA|Medtr4g147160.1 localized according to blastn similarity to
          EST sequences; therefore, the coding span corresponds
          only to an area of similarity since the initation codon
          and stop codon could not be precisely determined,
          putative chr04_pseudomolecule_IMGAG_V3
          36848613-36848822 H EGN_Mt090430 20090702
          Length = 69

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 1  MADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILIL 60
          M+DW                   Q+PG +R VEFG+F+T+G +I++H++++F    I  L
Sbjct: 1  MSDWGPVFVSIVLFVLLTPGLLFQIPGRSRCVEFGNFQTSGASILIHSLLYFGFVCIFFL 60

Query: 61 AVRVRIYTG 69
          A+++ +Y G
Sbjct: 61 AIKIHLYIG 69


>IMGA|Medtr3g104120.1 localized according to blastn similarity to
          EST sequences; therefore, the coding span corresponds
          only to an area of similarity since the initation codon
          and stop codon could not be precisely determined,
          related chr03_pseudomolecule_IMGAG_V3 25788369-25788578
          H EGN_Mt090430 20090702
          Length = 69

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 1  MADWAXXXXXXXXXXXXXXXXXXQLPGSTRHVEFGSFKTNGKAIVVHTVIFFSVFTILIL 60
          M +W                   Q+PG +R +EFG+F+T+  AIVVH++++F +  + ++
Sbjct: 1  MFNWGSIVVTVMLFVLLTPGLLFQVPGRSRCIEFGNFQTSAAAIVVHSLLYFGLVCLFLI 60

Query: 61 AVRVRIYTG 69
          A+RV  Y G
Sbjct: 61 AIRVHFYIG 69