Jatropha Genome Database

JcCB0272031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0272031.20 - phase: 0 /pseudo/partial
         (70 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g006110.1 hypothetical protein chr07_pseudomolecule_I...   114   1e-26

>IMGA|Medtr7g006110.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 857120-861498 E
           EGN_Mt090430 20090702
          Length = 240

 Score =  114 bits (285), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/57 (89%), Positives = 56/57 (98%)

Query: 14  RIVVPPELGYPENDFNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIMPN 70
           RI+VPPELGYPE+D+NK GPRPTTFSGQRALDFVLRNQGLIDKTLLFDIEL+KI+PN
Sbjct: 184 RIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIVPN 240