Jatropha Genome Database

JcCB0270661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0270661.10 + phase: 0 /partial
         (191 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core chr03_p...   196   5e-51
IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ; chr04_ps...   160   3e-40
IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanas...   110   5e-25

>IMGA|Medtr3g150290.1 Glycoside hydrolase, catalytic core
           chr03_pseudomolecule_IMGAG_V3 39561825-39558471 E
           EGN_Mt090430 20090702
          Length = 213

 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 100/115 (86%)

Query: 77  ETDDPTIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTSINNFQWG 136
           ETDD +I+ALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHD++IN F W 
Sbjct: 26  ETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDSAINFFLWD 85

Query: 137 LLDAQRSGHFRFFSEVIKFRGTHQVFRHENFLSNNDVTWHEDNWDNYESKFLAFT 191
            LDA++  HFRFFS  IK+R  H+   HENFLS N++TWHEDNWDNYESKFLAFT
Sbjct: 86  QLDARKGDHFRFFSNAIKYRHAHKTLSHENFLSENEITWHEDNWDNYESKFLAFT 140


>IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ;
           chr04_pseudomolecule_IMGAG_V3 40981878-40992441 E
           EGN_Mt090430 20090702
          Length = 788

 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 114/196 (58%), Gaps = 7/196 (3%)

Query: 1   GDSAMKGTFATRVSGSADLYRVNKRKPYHSVNFIIAHDGFTLYDLVSYNFKHXXXXXXXX 60
           G     G FA  + GS +LY+   RKP++S+N + AHDGFTL DLV+YN KH        
Sbjct: 507 GTDGFAGAFAECICGSPNLYQ-GGRKPWNSINLVCAHDGFTLADLVTYNNKHNLPNGEDN 565

Query: 61  XXXXXXXYSWNCGFEGETDDPTIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGN 120
                   SWNCG EGE    ++K +R RQM+NF L+LM+SQG PM+ MGDEYGHT+ GN
Sbjct: 566 NDGENHNSSWNCGEEGEFVSASVKKMRKRQMRNFFLSLMVSQGVPMIFMGDEYGHTKGGN 625

Query: 121 NNSYGHDTSINNFQWGLLDAQRSGHFRFFSEVIKFRGTHQVFRHENFLSNNDVTWH---- 176
           NN+Y HD  +N F+W   +   S  FRF   + KFR   +    ++F ++  + WH    
Sbjct: 626 NNTYCHDNYLNYFRWDKKEESSSDFFRFCRLLTKFRQECESLGLDDFPTSERLQWHGHFP 685

Query: 177 -EDNWDNYESKFLAFT 191
              +W    S+F+AFT
Sbjct: 686 VTPDWSE-SSRFVAFT 700


>IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanase,
           type I; ; ; chr03_pseudomolecule_IMGAG_V3
           39571747-39562313 E EGN_Mt090430 20090702
          Length = 672

 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 57/75 (76%)

Query: 1   GDSAMKGTFATRVSGSADLYRVNKRKPYHSVNFIIAHDGFTLYDLVSYNFKHXXXXXXXX 60
           GDS MKG+FATRVSGS+DLYRVNKR+PYH +NF+IAHDGF+L DLVSYNFKH        
Sbjct: 531 GDSGMKGSFATRVSGSSDLYRVNKRRPYHGINFVIAHDGFSLRDLVSYNFKHNEANGEGG 590

Query: 61  XXXXXXXYSWNCGFE 75
                  +SWNCGFE
Sbjct: 591 NDGCNDNFSWNCGFE 605