Jatropha Genome Database
- JcCB0269511.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0269511.10 - phase: 0 /pseudo
(238 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 62 4e-10
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 58 5e-09
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 56 1e-08
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 55 2e-08
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 52 2e-07
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 50 8e-07
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 50 1e-06
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 48 3e-06
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 47 8e-06
IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related chr0... 47 9e-06
IMGA|Medtr7g123950.1 Retrotransposon gag protein chr07_pseudomol... 47 9e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADL 105
S P + +S KL+ NY W + M+ ++ +N L I G+ + ++ + WE+ +
Sbjct: 19 SEGPSSLIVSPKLDGSNYLAWNRSMKRSLGTKNKLGFINGSIEQPDLDDLNRSAWERCNF 78
Query: 106 NACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQGKIR 165
SWIIN++ + + V Y TA +W+ L E + S D ++ +L NN KQG
Sbjct: 79 LVQSWIINSVSDSIAQTVVFYDTAYEVWQDLHERF-SKADRIRIANLRSSINNLKQGAKS 137
Query: 166 *LNSITVICREFGEKLIEDNPI 187
L T + + E+L PI
Sbjct: 138 VLEYFTEL-KSLWEELSSHRPI 158
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQAD 104
S P +SI+ K N NY W++ + ++ +N L I G+ P P ++ ++ T WE+ +
Sbjct: 20 SEGPNSLSITPKFNGSNYIAWSRTVERSLGTKNKLGFINGSIPMP-DEDDLNRTAWERCN 78
Query: 105 LNACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQGKI 164
SW+IN++ E + V +A +W L E + S D ++ +L NN KQG
Sbjct: 79 HLVQSWLINSVSESIAQTIVFCDSALEVWLDLKERF-SKIDRIRIANLRSNINNLKQGSK 137
Query: 165 R*LNSITVICREFGEKLIEDNPI 187
L+ T I + E+L PI
Sbjct: 138 FVLDYFTEI-KSLWEELSSHRPI 159
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADL 105
S +P + +S L D NY W++ M+ A+ +N + I G + Y W++ D
Sbjct: 36 SENPGAVLVSTPLTDHNYHNWSRAMKRALSSKNKIRFINGTLPKPSYLDSTYDLWDRCDN 95
Query: 106 NACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQG 162
SWI + H+ + + +A LW+ L + + G + F++ DL ++ +QG
Sbjct: 96 MVLSWITRTLSPHIFQSTICIESAFELWKDLEDRFSKG-NFFRVSDLLRDLHSTQQG 151
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQAD 104
S SP +SI+ KL NY W++ + ++ +N L I G+ P P ++ ++ WE+ +
Sbjct: 19 SESPNSLSITPKLTGSNYIAWSRTVERSLGTKNKLGFINGSIPMP-DEDDLNRAAWERCN 77
Query: 105 LNACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQGKI 164
SW+IN++ + + V TA +W L E + S D ++ +L NN KQG
Sbjct: 78 HLVQSWLINSVSDSIAPTVVFCDTALEVWLDLKERF-SKIDRIRIANLRSSINNLKQGAK 136
Query: 165 R*LNSITVICREFGEKLIEDNPI 187
L+ T + + E+L PI
Sbjct: 137 TVLDYFTEM-KSLWEELSSHRPI 158
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADL 105
S P + IS L+ NY W++ M A +N L I G+ ++ ++ WE+ +
Sbjct: 18 SEGPNSVLISPPLDGSNYLAWSRSMIRAFGAKNKLKFIDGSMEIPDEDDLNRNAWERCNH 77
Query: 106 NACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQG 162
SWIIN++ + V + A W L E + S D ++ L + NN KQG
Sbjct: 78 LVQSWIINSVSPQIAQTLVFHENAIDAWSDLKERF-SKADIIRIASLRSKINNMKQG 133
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQAD 104
S P ++I+ L+ NY WA+ MR A+ +N + G+ P P + + + W + +
Sbjct: 35 SDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDF-DPNFKAWNRCN 93
Query: 105 LNACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQ 161
+ SWI+N++E+ + + V A +W L E + G D ++ +L + + KQ
Sbjct: 94 MLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQG-DFIRISELQCEIFSLKQ 149
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 52 ISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGN-PAPLEKQNIAYTKWEQADLNACSW 110
+ ++ K N NY W++ M+ A+ + L I G P P + ++ T WE+ + SW
Sbjct: 29 LVVTPKFNGTNYLAWSRSMQRALGAKCKLGFINGEIPVP-DADDLNRTAWERCNHLVQSW 87
Query: 111 IINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQG 162
I+N++ E + V +A +W+ L E + S D ++ L N KQG
Sbjct: 88 ILNSLSESIAQTVVFCDSASEVWQDLHERF-SKTDRIRIATLRSSINILKQG 138
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADL 105
S P ++++ L NY W + M+ A+ +N I G+ ++ T WE+ +
Sbjct: 24 SEGPNSVTVTPLLTGPNYLAWNRSMKRALGTKNKFVFIDGSVPIPPMDDLNRTAWERCNN 83
Query: 106 NACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQGKIR 165
SWIIN++ + V + A +W L E + S D ++ L NN KQG
Sbjct: 84 LILSWIINSVSPQIAQTIVFHEYAIDVWIELQERF-SKVDRIRVASLRSSINNLKQGDKS 142
Query: 166 *LNSITVI 173
L+ T I
Sbjct: 143 VLDYFTSI 150
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADL 105
S P + ++ L+ NY W++ M A +N L + G ++ ++ + WE+ +
Sbjct: 18 SEGPNSVLVTPLLDGTNYLAWSRSMIRAFVVKNKLKFVDGYMEIPDEDDLNRSAWERCNH 77
Query: 106 NACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQG 162
SWIIN++ + V + A W L E + S D ++ L + NN KQG
Sbjct: 78 LIQSWIINSVSPPIAQTLVFHENAVDGWSDLKERF-SKADKIRIASLRSKINNMKQG 133
>IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related
chr05_pseudomolecule_IMGAG_V3 33221869-33220686 H
EGN_Mt090430 20090702
Length = 369
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADL 105
S +P ++ LN NY W++ M+ A++ + L I G + Y WE+AD
Sbjct: 48 SDNPGTPLVAAVLNGENYRTWSRSMKTALQAKLKLGFIDGTITKPGMKTTNYVNWERADS 107
Query: 106 NACSWIINNIEEHLVNNYVEYPTAKALWEGLAETY 140
+WIIN + L ++ TA+ +W L E +
Sbjct: 108 MVTAWIINATDPVLHSSISHASTARDIWLDLEERF 142
>IMGA|Medtr7g123950.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 29015812-29013196 E
EGN_Mt090430 20090702
Length = 302
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 46 SSSPQHISISVKLNDFNYALWAQLMRMAIEGRNHLHHITGNPAPLEKQNIAYTKWEQADL 105
S +P ++ LN NY W++ M +++ +N L I G + W++ +
Sbjct: 40 SDTPGISLVNQPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAPSADDPKLPLWKRCND 99
Query: 106 NACSWIINNIEEHLVNNYVEYPTAKALWEGLAETYDSGRDSFQLFDLTVQANNQKQGKI 164
+WI+++IE + + + TA A+W L + + G D +++ + + + +QG +
Sbjct: 100 LVLTWILHSIEPDIARSVIFSDTAAAVWSDLHDRFSQG-DESRIYQIRQEISECRQGSL 157