Jatropha Genome Database

JcCB0269491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0269491.10 - phase: 0 /pseudo/partial
         (452 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g141060.1 Violaxanthin de-epoxidase chr04_pseudomolec...    89   6e-18

>IMGA|Medtr4g141060.1 Violaxanthin de-epoxidase
           chr04_pseudomolecule_IMGAG_V3 34733253-34736761 E
           EGN_Mt090430 20090702
          Length = 529

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 48/240 (20%)

Query: 1   MSLETTPPLNLKSGFLLNRRFIASMHPFPPANHRRYPAPMQLSFPFRAKTVNRQETNIPA 60
           MS +    L+L +  L  + +  S + FP +    + +P   S    + T        P 
Sbjct: 1   MSFKLQLHLHLPTHVLQTQHYFLSSNLFPFS----HSSPCSFSISLSSHTTT------PY 50

Query: 61  VLETASVATENQ---SDSPVRIVALVGKGSISPLKCATWEEVMLHTAKRLKWVDEGYDML 117
               +S   ++     + PVR+VA+VG G++SPL  A+WE+VMLHTAKRLKWVDEGY++L
Sbjct: 51  CFPPSSTTVDSDMTTDEPPVRMVAIVGHGAVSPLNSASWEQVMLHTAKRLKWVDEGYELL 110

Query: 118 VFTDNLCXXXXXXXXXAKGIEPCRYITDSCHFKSRISQVDPIQXQKCSKHNLLRLISESC 177
           VFTD                   + I  +   +  + + D +     +    +  I  S 
Sbjct: 111 VFTD-------------------KCIQSNEPLQRELLKADILVIVAVTNKESVNWIKISS 151

Query: 178 KQTRRILHFRMKL-----MGLY----------LEKIIGVSR-SKKIKESMEVVKTVWEAW 221
           K    ++ F   L     +G Y            KI+G S    K K+S EVV+TV EAW
Sbjct: 152 KTIENVICFDSSLDLKNKLGGYEIHNEVRGSIFGKILGSSELLDKTKDSYEVVQTVTEAW 211