Jatropha Genome Database

JcCB0268911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0268911.10 + phase: 0 /pseudo
         (463 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g129820.1 Krr1 chr02_pseudomolecule_IMGAG_V3 31498133...   216   2e-56

>IMGA|Medtr2g129820.1 Krr1 chr02_pseudomolecule_IMGAG_V3
           31498133-31501523 E EGN_Mt090430 20090702
          Length = 658

 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 163/434 (37%), Positives = 215/434 (49%), Gaps = 36/434 (8%)

Query: 20  SNIEIDKEFARRYDHNKKREALQRYEELKKKGQIXXXXXXXXXXXXXXXXXXXIIKLSKK 79
           SNI+ID+E+ARR++HNK+RE LQRYEELKKKG I                    +     
Sbjct: 17  SNIKIDEEYARRFEHNKRREDLQRYEELKKKGVIGSPSHTEDDESESESSSDDDVNNFNT 76

Query: 80  ENLRKFIENLNKVKKRDPSLYNQDSRLFXXXXXXXXXXXXXXXXXIDXXXXXXXXXXXXX 139
           ++ ++F + L KVKK+DP L  +D +LF                                
Sbjct: 77  KSDKEFFDALIKVKKKDPVLKQKDVKLFESDHSSEDESDDEKSKD--------KEKKSMF 128

Query: 140 XXDVMAQQLLEEGPEFDDVE--------SSSMKKTYNEEQDELKKAFLDAVKDAEMDTEG 191
             DV+A+ L+EEGP+F D E        S+  KKTY EEQ+ELK+AFL A   AE D  G
Sbjct: 129 LKDVVAKHLIEEGPDFGDEEDETNEIGISNGGKKTYAEEQEELKQAFLKA---AEKDGLG 185

Query: 192 D--LLKVKEKKNGNDVKADDGEFEKKLGEYFGPETELDENNKFLKDFFEKQMWVDRGSED 249
           D   L +KEK   + V+++D EFE+KL  YF    + +EN+ FLK++F+ +MWVD+ +E+
Sbjct: 186 DADFLTLKEKTGEDKVESEDEEFEEKLDAYFD---DSNENSLFLKNYFKNKMWVDKNAEN 242

Query: 250 RRRGFXXXXXXXXXXXXXXXXXXXXXXXXSYNFRYEENAGDRVMGHSRKVEGSVRKKENA 309
              G                          Y   ++EN  DRV+GH+RKVEGSVRKK N+
Sbjct: 243 LNVG-------EEDLQEISEDEMEIERQEEYEVSFQENPEDRVLGHARKVEGSVRKKTNS 295

Query: 310 RKEQRKSKEERMKIVEMQRKEEVKHXXXXXXXXXXXXXXXXXXAAGIRXXXXXXXXXXXX 369
           RKEQRKSKEER  I + +R EE+KH                   AGI             
Sbjct: 296 RKEQRKSKEEREAIRQKERDEELKHLKNVKMQEIQEKVKKIKKIAGINDDDIIPLSTAEL 355

Query: 370 XXXXXPSEYDKLMKKAFGEEYYNADDVDPGFGSNNXXXXXXXXXXXXXXXXXXXLLGLPK 429
                P EYD++MKKAF  +YYN +DVDP F S                     LLGLPK
Sbjct: 356 EKEFDPEEYDRMMKKAFDAKYYNEEDVDPEFCSEG-----EEDMEKPDFEKEDDLLGLPK 410

Query: 430 GWEAVDNSDGFLAA 443
            W+   +  GFLAA
Sbjct: 411 DWDECGSGGGFLAA 424