Jatropha Genome Database

JcCB0268641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0268641.10 - phase: 2 /partial
         (188 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g138050.1 hypothetical protein chr04_pseudomolecule_I...    59   1e-09
IMGA|Medtr4g138000.1 HMG-I and HMG-Y, DNA-binding chr04_pseudomo...    59   1e-09
IMGA|Medtr3g163550.1 Arabidopsis phospholipase-like chr03_pseudo...    59   2e-09
IMGA|Medtr4g138070.1 hypothetical protein chr04_pseudomolecule_I...    57   5e-09
IMGA|Medtr4g138080.1 Arabidopsis phospholipase-like chr04_pseudo...    57   6e-09

>IMGA|Medtr4g138050.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 34141176-34137826 E
           EGN_Mt090430 20090702
          Length = 475

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDIPLTLS 115
           + GY+VK    P+LR I  K+GDIA NC  KS   R+ LLE++  ++  L   ++  T  
Sbjct: 250 INGYQVKPEFMPMLRKIIGKHGDIAKNCLAKSVKFRSVLLEMICGIISDLDEKNVKNTRE 309

Query: 116 EI-RVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMRSMLK 158
           E+ +   +++ +++S ++++ WL   L +  +  +I +   MLK
Sbjct: 310 EVLKTKIDQVDEIKSMKVEVEWLRTRLVEALDAREIMKKFVMLK 353


>IMGA|Medtr4g138000.1 HMG-I and HMG-Y, DNA-binding
           chr04_pseudomolecule_IMGAG_V3 34129872-34122527 E
           EGN_Mt090430 20090702
          Length = 791

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDIPLTLS 115
           + GY+VK    P+LR I  K+GDIA NC  KS   R+ LLE++  ++  L   ++  T  
Sbjct: 309 INGYQVKPEFMPMLRKIIGKHGDIAKNCLAKSVKFRSVLLEMICGIISDLDEKNVKNTRE 368

Query: 116 EI-RVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMRSMLK 158
           E+ +   +++ +++S ++++ WL   L +  +  +I +   MLK
Sbjct: 369 EVLKTKIDQVDEIKSMKVEVEWLRTRLVEALDAREIMKKFVMLK 412


>IMGA|Medtr3g163550.1 Arabidopsis phospholipase-like
           chr03_pseudomolecule_IMGAG_V3 42995680-42990930 E
           EGN_Mt090430 20090702
          Length = 392

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 59  YEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDIPLTLSEIR 118
           Y VK S   +L+ I  KYGDI A+C  +S   R+  +E V  VV  LQSS   ++ S++ 
Sbjct: 220 YNVKESFGSILQTIVDKYGDIGASCDLESVVMRSYYMECVCFVVQELQSSSDSISKSKVS 279

Query: 119 VLQNEMKDLESTRLKLSWLTQPLEKISE-VEKIAEMRSM 156
            L + +KD+ES  L+++WL   L++I E +E I+  + M
Sbjct: 280 ELLDIVKDVESAHLRVAWLHNTLDEIVENIELISHHQDM 318


>IMGA|Medtr4g138070.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 34148647-34146008 H
           EGN_Mt090430 20090702
          Length = 410

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 9/108 (8%)

Query: 56  VEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDIPLTLS 115
           + GY+VK    P+L  I +K+GDIA NC  KS   R++LLEI+  ++   + ++    LS
Sbjct: 241 INGYQVKQEFMPILAKIISKHGDIANNCLTKSVKGRSALLEIICGIISEFEDNN----LS 296

Query: 116 EIR--VLQNEMK---DLESTRLKLSWLTQPLEKISEVEKIAEMRSMLK 158
            I   VL++ ++    ++  ++++ WL   L ++ E   I +  ++LK
Sbjct: 297 NINGCVLEDRIRFVGGIKDMKVEVDWLHMRLIEVREARDILKKSAVLK 344


>IMGA|Medtr4g138080.1 Arabidopsis phospholipase-like
           chr04_pseudomolecule_IMGAG_V3 34158038-34155572 E
           EGN_Mt090430 20090702
          Length = 425

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 55  LVEGYEVKASVAPVLRAIFAKYGDIAANCQYKSPSDRASLLEIVSDVVHRLQSSDIP-LT 113
           +V  Y+VK     +LR I  K+GDI  NC  KS   R++ L+ + +++  L   DI  + 
Sbjct: 231 MVNIYQVKPEFMSILRKIIGKHGDITKNCVTKSVKFRSAFLDTICEIISDLDKKDIANIK 290

Query: 114 LSEIRVLQNEMKDLESTRLKLSWLTQPLEKISEVEKIAEMRSMLKSVKANSMMVIKAA 171
            +++++   ++ D+++ ++++ WL   L +I E  +I +    LK  K +    I+ A
Sbjct: 291 GNDLKIKIGDVNDIKNLKVEVEWLHTRLTEILEARQILKKSGTLKEKKDSIRKFIEIA 348