Jatropha Genome Database

JcCB0267531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0267531.10 + phase: 2 /pseudo/partial
         (270 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g117440.2 Cycloeucalenol cycloisomerase, putative chr...   387   e-108
IMGA|Medtr3g117440.1 Cycloeucalenol cycloisomerase, putative chr...   386   e-108

>IMGA|Medtr3g117440.2 Cycloeucalenol cycloisomerase, putative
           chr03_pseudomolecule_IMGAG_V3 29588739-29595148 E
           EGN_Mt090430 20090702
          Length = 285

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/226 (83%), Positives = 202/226 (89%), Gaps = 5/226 (2%)

Query: 20  SGCCSSSLWLAPNPSKRWGELFFLCYTPFWLTLCLGVVVPYKLYESFTELEYLLLAMISA 79
               + SLW APN SKRWGELFFL YTPFWL+L LG+VVPYKLYE+FTELEYLLL +ISA
Sbjct: 2   GASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYKLYENFTELEYLLLGLISA 61

Query: 80  VPSFLIPMIFVGKADSSLSWKDRYWVKASVFSASLWIIIFSYVGNYFWTHYFFTVLGASY 139
           VP+FLIPM+FVGKAD  +SW+DRYWVKAS     LWIIIFSYVGNYFWTHYFFTVLGASY
Sbjct: 62  VPAFLIPMLFVGKADKGISWQDRYWVKAS-----LWIIIFSYVGNYFWTHYFFTVLGASY 116

Query: 140 TFPSWKMNDVPHTTFLLTHVCFLFYHVTSNMTLRRLRHAIAHLPDKLRWATEAAWILALA 199
           TFPSWKMN+VPHTTFLLTHVCFLFYHV SNMTLRRLRH +A  P+K+RWA EAAWILALA
Sbjct: 117 TFPSWKMNNVPHTTFLLTHVCFLFYHVASNMTLRRLRHFLADTPEKIRWAAEAAWILALA 176

Query: 200 YFIAYLETLAISNFPYYEFVDRASMYTVGSLFYAIYFIVSFPMFLR 245
           YFIAYLETLAISNFPYYEFVDR SMY VGSLFYAIYFIVSFPMFLR
Sbjct: 177 YFIAYLETLAISNFPYYEFVDRESMYKVGSLFYAIYFIVSFPMFLR 222


>IMGA|Medtr3g117440.1 Cycloeucalenol cycloisomerase, putative
           chr03_pseudomolecule_IMGAG_V3 29588739-29595148 E
           EGN_Mt090430 20090702
          Length = 307

 Score =  386 bits (992), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/219 (85%), Positives = 200/219 (91%), Gaps = 5/219 (2%)

Query: 27  LWLAPNPSKRWGELFFLCYTPFWLTLCLGVVVPYKLYESFTELEYLLLAMISAVPSFLIP 86
           LW APN SKRWGELFFL YTPFWL+L LG+VVPYKLYE+FTELEYLLL +ISAVP+FLIP
Sbjct: 31  LWFAPNLSKRWGELFFLLYTPFWLSLSLGIVVPYKLYENFTELEYLLLGLISAVPAFLIP 90

Query: 87  MIFVGKADSSLSWKDRYWVKASVFSASLWIIIFSYVGNYFWTHYFFTVLGASYTFPSWKM 146
           M+FVGKAD  +SW+DRYWVKAS     LWIIIFSYVGNYFWTHYFFTVLGASYTFPSWKM
Sbjct: 91  MLFVGKADKGISWQDRYWVKAS-----LWIIIFSYVGNYFWTHYFFTVLGASYTFPSWKM 145

Query: 147 NDVPHTTFLLTHVCFLFYHVTSNMTLRRLRHAIAHLPDKLRWATEAAWILALAYFIAYLE 206
           N+VPHTTFLLTHVCFLFYHV SNMTLRRLRH +A  P+K+RWA EAAWILALAYFIAYLE
Sbjct: 146 NNVPHTTFLLTHVCFLFYHVASNMTLRRLRHFLADTPEKIRWAAEAAWILALAYFIAYLE 205

Query: 207 TLAISNFPYYEFVDRASMYTVGSLFYAIYFIVSFPMFLR 245
           TLAISNFPYYEFVDR SMY VGSLFYAIYFIVSFPMFLR
Sbjct: 206 TLAISNFPYYEFVDRESMYKVGSLFYAIYFIVSFPMFLR 244