Jatropha Genome Database

JcCB0265081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0265081.10 + phase: 2 /partial
         (231 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g019710.1 Sin-like protein conserved region chr05_pse...   154   3e-38
IMGA|Medtr5g026170.1 Sin-like protein conserved region chr05_pse...   119   1e-27

>IMGA|Medtr5g019710.1 Sin-like protein conserved region
           chr05_pseudomolecule_IMGAG_V3 7377933-7384127 E
           EGN_Mt090430 20090702
          Length = 443

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 142/232 (61%), Gaps = 10/232 (4%)

Query: 1   FLLSLPLEERMKKLLIEGPPVQRFSVLKHFAPEDTVEDVLTVVQKHGQLVQGLWAPRTAL 60
           +LLSLP+E+R++ LLIEGPP+ RFS +KHFAPE + +++L+V++K  QL++G W PR++L
Sbjct: 88  YLLSLPVEKRLQTLLIEGPPLHRFSAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSSL 147

Query: 61  LFPDSKEVYKPPARDYILLLFSKSLVISTSQITSL-PARLKEPVRAFLNLFAVERPSFRD 119
           LFP      +  AR+YIL+ F KSL + + ++  L    L   ++ F+  FA+E+   + 
Sbjct: 148 LFPTGG--IESLARNYILVRFHKSLTVKSDELRRLGGGELGNRMKHFVMQFALEKFDLKS 205

Query: 120 ----WKFKESPDAAFMKLHPEVVKKQVVIWEGVEKKLTGFLSSSSKGGKQNDKRQPTLAH 175
               WKFKE PD +F+K  P VVKKQ  I++ +E ++   +   + GGK+  K   T + 
Sbjct: 206 KENYWKFKELPDESFIKEFPIVVKKQEEIFKILENEVNSII--GTLGGKRKLKSAITNSG 263

Query: 176 NLTKELDPHKIAPKSASVNRVPIRT-TITSESREALLKVLPKVLQTHKVCRY 226
                       P++ S+   P R+ T++SE+R AL   L K+ QTHKVC +
Sbjct: 264 VNNALFTSTNSDPRATSLGEDPPRSMTMSSETRHALPIALKKLFQTHKVCSF 315


>IMGA|Medtr5g026170.1 Sin-like protein conserved region
           chr05_pseudomolecule_IMGAG_V3 10545817-10541313 H
           EGN_Mt090430 20090702
          Length = 487

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 101/152 (66%), Gaps = 3/152 (1%)

Query: 2   LLSLPLEERMKKLLIEGPPVQRFSVLKHFAPEDTVEDVLTVVQKHGQLVQGLWAPRTALL 61
           LLSLP+E+R++ LLIEGPP+ RFS +K+FAPE + E++L+ +QKH  L+QG W PR +LL
Sbjct: 324 LLSLPVEKRLETLLIEGPPLHRFSAIKYFAPEYSNEELLSFLQKHAILLQGYWVPRGSLL 383

Query: 62  FPDSKEVYKPPARDYILLLFSKSLVISTSQITSLPARLKEPVRAFLNLFAVERPSFRDWK 121
           +P+     +  AR+Y+L+LF KSL +  + +     R+K  V+ F     V+    + WK
Sbjct: 384 YPNGG--VESLARNYVLVLFHKSLKVRFADVRIWSDRVKHFVKQFA-FEQVDLKRVKYWK 440

Query: 122 FKESPDAAFMKLHPEVVKKQVVIWEGVEKKLT 153
           FKE  D +F+K  P VV +Q  I++ +E+++T
Sbjct: 441 FKELSDESFIKEFPNVVIQQEEIFKILEEEVT 472