Jatropha Genome Database

JcCB0263761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0263761.10 - phase: 0 /partial
         (256 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g083910.1 Helix-hairpin-helix motif, class 2 chr07_ps...   364   e-101
IMGA|Medtr6g059430.1 Chromo; Helix-hairpin-helix motif, class 2 ...   120   9e-28

>IMGA|Medtr7g083910.1 Helix-hairpin-helix motif, class 2
           chr07_pseudomolecule_IMGAG_V3 18038402-18033538 E
           EGN_Mt090430 20090702
          Length = 612

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/241 (72%), Positives = 195/241 (80%)

Query: 1   MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKSYVRKPHVRLTFFRTI 60
           MGVGG FW+LLKPY+R +G DFLR+KRVA+DLS+WIVQH  AIK++V+KPH+RLTFFRTI
Sbjct: 1   MGVGGNFWELLKPYSRNEGFDFLRNKRVAIDLSFWIVQHNNAIKTHVKKPHLRLTFFRTI 60

Query: 61  NLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVAEEGVSVERNRVFSKXX 120
           NLFSKFGAFPVFVVDG PSPLK            GI+ +SLPVAEEGVS  RN  FS+  
Sbjct: 61  NLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRNSTFSRCV 120

Query: 121 XXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIKCIRPNT 180
                     G+PVL A GEAEALCAQLN EG VDACIT DSDAFLFGA+C+IK   PN+
Sbjct: 121 QECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFSPNS 180

Query: 181 KEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTFSEDEIL 240
           KEPFECY MSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIG+D+ALRFVQ F ED+IL
Sbjct: 181 KEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFGEDDIL 240

Query: 241 N 241
           N
Sbjct: 241 N 241


>IMGA|Medtr6g059430.1 Chromo; Helix-hairpin-helix motif, class 2
           chr06_pseudomolecule_IMGAG_V3 10712939-10721009 E
           EGN_Mt090430 20090702
          Length = 571

 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 1   MGVGGKFWDLLKPYARPQGPDFLRDKRVAVDLSYWIVQHETAIKSYV---RKPHVRLTFF 57
           MGV    WD+L+   +      L++KRV VDLS W+VQ +   KS+     K H+R  F 
Sbjct: 1   MGVKN-LWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVCKSHACLKEKVHLRGLFH 59

Query: 58  RTINLFSKFGAFPVFVVDGIPSPLKXXXXXXXXXXXXGIDVSSLPVA-EEGVSVERN--R 114
           R   L +      VFV DG    +K            G +V+      ++  S+ RN   
Sbjct: 60  RLRALIA-LNCTVVFVSDGSIPAIKLSTYRRRLNN--GKEVAQKETNLQKTTSLRRNLGS 116

Query: 115 VFSKXXXXXXXXXXXFGMPVLTANGEAEALCAQLNREGLVDACITADSDAFLFGAECVIK 174
            FS             G+  L    EAEA CA LN E L D C ++DSD FLFGA  V +
Sbjct: 117 EFSCMISEAKILGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYR 176

Query: 175 CIRPNTKEPFECYQMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGVDTALRFVQTF 234
            I         CY+M+DIE  LG  R  LI +SLL+G+D+   GV G+G D+A + V++ 
Sbjct: 177 DICLGDGGYVVCYEMADIERKLGFGRDSLICLSLLLGSDY-YPGVHGLGPDSACQIVKSI 235

Query: 235 SEDEILNGFAS 245
            +  +L  FAS
Sbjct: 236 GDKFVLKKFAS 246