Jatropha Genome Database

JcCB0262451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0262451.10 - phase: 0 /pseudo
         (90 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g151400.1 Cellular retinaldehyde binding/alpha-tocoph...    58   1e-09
IMGA|Medtr8g093390.1 Cellular retinaldehyde binding/alpha-tocoph...    45   6e-06

>IMGA|Medtr3g151400.1 Cellular retinaldehyde
           binding/alpha-tocopherol transport; Cellular
           retinaldehyde-binding/triple function, N-terminal
           chr03_pseudomolecule_IMGAG_V3 40138254-40135982 E
           EGN_Mt090430 20090702
          Length = 272

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 43/70 (61%)

Query: 9   VTQMRKSVEKLGSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVPNGFIPDS 68
           +  MR  VE    +++   D  + RFL AR +D +KA+ MF+++ KWR +FVP+G +  S
Sbjct: 48  INLMRTLVESRDPSSKEVDDLMIRRFLRARDLDVDKASAMFLKYMKWRKSFVPSGSVSPS 107

Query: 69  DVLDELQTRK 78
           ++ D+L   K
Sbjct: 108 EIADDLAQEK 117


>IMGA|Medtr8g093390.1 Cellular retinaldehyde
          binding/alpha-tocopherol transport; Cellular
          retinaldehyde-binding/triple function, N-terminal
          chr08_pseudomolecule_IMGAG_V3 20510334-20506470 F
          EGN_Mt090430 20090702
          Length = 290

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 4  TQEITVTQMRKSVEKL-GSATESCSDTTLMRFLIARSMDPEKAAKMFVQWQKWRSAFVP 61
          TQE  V ++R ++  L G   + C+D  L R+L AR+ + +KA KM  +  KWRS++ P
Sbjct: 18 TQEAKVAELRAAIGPLSGRRLKYCTDACLRRYLEARNWNVDKAKKMLEESLKWRSSYKP 76