Jatropha Genome Database

JcCB0259591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0259591.10 - phase: 0 /partial
         (81 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g044100.1 Nucleoside phosphatase GDA1/CD39 chr05_pseu...    58   1e-09

>IMGA|Medtr5g044100.1 Nucleoside phosphatase GDA1/CD39
           chr05_pseudomolecule_IMGAG_V3 18277947-18277051 E
           EGN_Mt090430 20090702
          Length = 196

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 25  RIVPKKEWGNTKVQLLANGEEMEGLEFKVKEMIMESCRLVFRKSGFAFKDDWARII 80
           R +PK+ W  T+++L+A    M  L+ +V+E I+ESCR V R SGF F+DDWA +I
Sbjct: 125 RRIPKENWRETEIRLMATAG-MRMLDVEVQEKILESCRKVLRVSGFMFRDDWASVI 179