Jatropha Genome Database

JcCB0256761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0256761.10 - phase: 0 /partial
         (100 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g119840.1 hypothetical protein chr08_pseudomolecule_I...   127   2e-30

>IMGA|Medtr8g119840.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 27274651-27280812 E
           EGN_Mt090430 20090702
          Length = 660

 Score =  127 bits (318), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 71/97 (73%), Gaps = 5/97 (5%)

Query: 4   KIEISIDKLPVKRLEAIDENGAERFPTDVGYDEKRVSLIRRIDFAWAVXXXXXXXXXXXX 63
           ++++S+DKLP+KRL++I+ENG ERFP DV YDEKRVSLIRRIDFAWA+            
Sbjct: 6   ELQLSLDKLPIKRLDSIEENGNERFPLDVDYDEKRVSLIRRIDFAWAI-----EKDEEKK 60

Query: 64  XXXXXXXXTTPWPWQSMVENLQLAHQELSIIIDLINT 100
                   TTPW WQ MVENLQLAHQELS+IID INT
Sbjct: 61  KQKKSSKETTPWQWQGMVENLQLAHQELSVIIDFINT 97