Jatropha Genome Database

JcCB0254931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0254931.10 - phase: 0 
         (77 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g126150.1 Alba, DNA/RNA-binding protein chr02_pseudom...    83   4e-17
IMGA|Medtr5g007110.1 Uncharacterised conserved protein UCP030333...    45   8e-06

>IMGA|Medtr2g126150.1 Alba, DNA/RNA-binding protein
           chr02_pseudomolecule_IMGAG_V3 30499152-30501662 E
           EGN_Mt090430 20090702
          Length = 136

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 44/45 (97%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTENF 57
           EILKNNGLA+EKK+MTSTVD++D++RGRPVQKAKIEI+LGKT NF
Sbjct: 70  EILKNNGLAVEKKVMTSTVDIKDDSRGRPVQKAKIEIVLGKTANF 114


>IMGA|Medtr5g007110.1 Uncharacterised conserved protein UCP030333,
           DNA/RNA-binding Alba-related
           chr05_pseudomolecule_IMGAG_V3 981624-980078 E
           EGN_Mt090430 20090702
          Length = 138

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 13  EILKNNGLAIEKKIMTSTVDMRDEARGRPVQKAKIEILLGKTEN 56
           EILK NG AIEK +  STVD ++   GR   KAK+ I+LGK ++
Sbjct: 85  EILKRNGWAIEKSVEASTVDAKEGKEGRGAPKAKLGIVLGKAKS 128