Jatropha Genome Database

JcCB0252341.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.30 + phase: 0 /pseudo
         (204 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g008220.1 Formyl transferase, N-terminal chr01_pseudo...   116   8e-27

>IMGA|Medtr1g008220.1 Formyl transferase, N-terminal
           chr01_pseudomolecule_IMGAG_V3 626070-630937 E
           EGN_Mt090430 20090702
          Length = 305

 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 83/130 (63%), Gaps = 10/130 (7%)

Query: 66  RLECANSSEKLGSTGFHNEGYLNSGIKRKKLAVFVSGGGSNFKSVHEACIQGSVHGDVVA 125
           R+ C++SS+    +  H+        +RKKLAVFVSGGGSNFKS+HEA  +GS+ GDVV 
Sbjct: 71  RVWCSSSSDTADPSNGHDG-------RRKKLAVFVSGGGSNFKSIHEASKRGSLRGDVVV 123

Query: 126 VVTNRKGCGGAEYARNKEIPVVLFPRTKDEPDGLSPRDLVAALRFGXFLFVFLNFELKFC 185
           +VTN+  CGGAEYAR   IPV++FP+ KD  DGLS  DLV  LR     FV L   LK  
Sbjct: 124 LVTNKSDCGGAEYARQNGIPVIVFPKAKDGYDGLSANDLVDTLRRFEVDFVLLAGYLKLI 183

Query: 186 SSFNNEMVHA 195
            +   E++ A
Sbjct: 184 PA---ELIRA 190