Jatropha Genome Database

JcCB0252341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0252341.10 + phase: 1 /partial
         (100 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g166470.1 Ribosomal protein S8E chr03_pseudomolecule_...   134   1e-32
IMGA|Medtr8g012690.1 Plant EC metallothionein-like protein, fami...   128   8e-31
IMGA|Medtr3g166450.1 Ribosomal protein S8E chr03_pseudomolecule_...   117   1e-27
IMGA|Medtr8g012680.1 Ribosomal protein S8E chr08_pseudomolecule_...   113   2e-26
IMGA|Medtr3g166400.1 Ribosomal protein S8E chr03_pseudomolecule_...    77   1e-15

>IMGA|Medtr3g166470.1 Ribosomal protein S8E
           chr03_pseudomolecule_IMGAG_V3 43576649-43574789 E
           EGN_Mt090430 20090702
          Length = 258

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 73/85 (85%), Gaps = 1/85 (1%)

Query: 16  FTEGEGATEEVKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGY 75
            +E E  TEEVKKSN+V RKLE+RQ+ R+LDP IE QF GGRL+ACISSRPGQCGRADGY
Sbjct: 175 LSESEAVTEEVKKSNNVQRKLEQRQKDRRLDPLIEVQFGGGRLLACISSRPGQCGRADGY 234

Query: 76  ILEGKELEFYMKKIQRKKGKGAGAA 100
           ILEGKELEFYMKK+Q+KK  G GAA
Sbjct: 235 ILEGKELEFYMKKLQKKKN-GNGAA 258


>IMGA|Medtr8g012690.1 Plant EC metallothionein-like protein, family
           15; Ribosomal protein S8E chr08_pseudomolecule_IMGAG_V3
           2208147-2202841 E EGN_Mt090430 20090702
          Length = 318

 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 64/70 (91%)

Query: 29  SNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYILEGKELEFYMKK 88
           SNHVLRKLE R++ R+LD HIEEQF GGRL+ACISSRPGQCGRADGYILEGKELEFYMKK
Sbjct: 249 SNHVLRKLENREKDRQLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKK 308

Query: 89  IQRKKGKGAG 98
           +QRKKGK A 
Sbjct: 309 LQRKKGKSAA 318


>IMGA|Medtr3g166450.1 Ribosomal protein S8E
          chr03_pseudomolecule_IMGAG_V3 43571613-43571242 E
          EGN_Mt090430 20090702
          Length = 87

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 67/85 (78%), Gaps = 1/85 (1%)

Query: 15 NFTEGEGATEEVKKSNHVLRKLEKRQQTRKLD-PHIEEQFAGGRLMACISSRPGQCGRAD 73
          N+ + E  T+EVK SN+V RKLE+RQ+  +LD P IEEQ  GGRL+ACISSRPGQCG AD
Sbjct: 3  NWQKSEDVTDEVKNSNNVQRKLEQRQKDNRLDIPVIEEQLGGGRLLACISSRPGQCGTAD 62

Query: 74 GYILEGKELEFYMKKIQRKKGKGAG 98
          GYIL+GKELEFYMKK+Q+K    A 
Sbjct: 63 GYILKGKELEFYMKKLQKKMSNDAA 87


>IMGA|Medtr8g012680.1 Ribosomal protein S8E
           chr08_pseudomolecule_IMGAG_V3 2198871-2196264 F
           EGN_Mt090430 20090702
          Length = 215

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 56/61 (91%)

Query: 26  VKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADGYILEGKELEFY 85
           VKKS HV RKLE+RQ+ R+LD HIEEQF GGRL+ACISSRPGQCGRADGYILEGKELEFY
Sbjct: 143 VKKSAHVQRKLEQRQKERQLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFY 202

Query: 86  M 86
           M
Sbjct: 203 M 203


>IMGA|Medtr3g166400.1 Ribosomal protein S8E
          chr03_pseudomolecule_IMGAG_V3 43562710-43561531 E
          EGN_Mt090430 20090702
          Length = 82

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 46/58 (79%), Gaps = 1/58 (1%)

Query: 18 EGEGATEE-VKKSNHVLRKLEKRQQTRKLDPHIEEQFAGGRLMACISSRPGQCGRADG 74
          E +  TE+ VKKSN V RKLE+RQ+ R+LD  IE QFAGGRL+ACISS+PG CGRA G
Sbjct: 4  ESDALTEDQVKKSNKVQRKLEQRQKDRRLDTLIEAQFAGGRLLACISSQPGLCGRAMG 61