Jatropha Genome Database

JcCB0250351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0250351.10 + phase: 0 
         (126 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g005180.1 hypothetical protein chr06_pseudomolecule_I...    54   1e-08
IMGA|Medtr5g034560.1 hypothetical protein chr05_pseudomolecule_I...    49   9e-07

>IMGA|Medtr6g005180.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 176212-180117 H
           EGN_Mt090430 20090702
          Length = 116

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 6/59 (10%)

Query: 54  TTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFFDSPVLDVMFDIGINK 112
           TTPTAKE +IP  M+CPPAP+K+K S        N V+  +EFF  P L+ +F +  ++
Sbjct: 57  TTPTAKEARIPVNMSCPPAPRKKKVS------KCNNVVGGREFFKCPDLETVFKVSFSQ 109


>IMGA|Medtr5g034560.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 14208554-14207562 F
           EGN_Mt090430 20090702
          Length = 115

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 39  VDEKAKTETTTNLDC-TTPTAKENKIPDVMTCPPAPKKRKASLAVGDNASNKVMATKEFF 97
           +++  + E+    +C TTP  + ++IP  + CPPAP+KRKASL       N     +EFF
Sbjct: 42  LEKSKQEESGMEEECSTTPRGEGSRIPTTLICPPAPRKRKASLKW-----NYRGKAREFF 96

Query: 98  DSPVLDVMF 106
             P L+ +F
Sbjct: 97  TPPELETVF 105