Jatropha Genome Database

JcCB0249431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0249431.10 + phase: 0 /partial
         (196 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g076170.1 Superoxide dismutase, copper/zinc binding c...   222   1e-58
IMGA|Medtr7g140060.1 Superoxide dismutase, copper/zinc binding c...   162   1e-40
IMGA|Medtr6g031060.1 Superoxide dismutase, copper/zinc binding c...   136   7e-33
IMGA|Medtr6g031060.2 Superoxide dismutase, copper/zinc binding c...    98   3e-21
IMGA|Medtr8g106410.1 Superoxide dismutase, copper/zinc binding; ...    63   9e-11

>IMGA|Medtr4g076170.1 Superoxide dismutase, copper/zinc binding
           chr04_pseudomolecule_IMGAG_V3 15060986-15057237 F
           EGN_Mt090430 20090702
          Length = 202

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 138/195 (70%), Gaps = 19/195 (9%)

Query: 1   MAAHTILAASP-SSHPLLYPFPNXXXXXXXXXXXXFHGVSLKLPRQSLPLSXXXXXXXXX 59
           MA+H++++ SP +SH LL                 F GVS+KL  Q   LS         
Sbjct: 1   MASHSLMSPSPLTSHSLLR--------------SSFSGVSVKLSPQFSTLSRSTFKPLSV 46

Query: 60  XXXXXXXXXXXXXXXXGTSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTT 119
                           G S VEGVVTLTQE++GPTTVNVR+TGLTPG HGFHLHEYGDTT
Sbjct: 47  VAAAKKAVAVLK----GNSTVEGVVTLTQENEGPTTVNVRITGLTPGLHGFHLHEYGDTT 102

Query: 120 NGCISTGAHFNPNNKTHGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVG 179
           NGCISTG HFNPN  THGAPEDEIRHAGDLGNI+A+A+GVAEATIVDNQIPL+GPN+VVG
Sbjct: 103 NGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVVG 162

Query: 180 RALVVHELEDDLGKG 194
           RALVVHELEDDLGKG
Sbjct: 163 RALVVHELEDDLGKG 177


>IMGA|Medtr7g140060.1 Superoxide dismutase, copper/zinc binding
           chr07_pseudomolecule_IMGAG_V3 33647393-33650274 E
           EGN_Mt090430 20090702
          Length = 152

 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 92/118 (77%)

Query: 77  TSNVEGVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTH 136
           +++V G ++ TQE +GPTTV   ++GL PG HGFH+H  GDTTNGC+STG HFNPN K H
Sbjct: 11  SNDVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTGPHFNPNGKEH 70

Query: 137 GAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
           GAPEDE RHAGDLGN+    DG A  TI DNQIPL+GPN+++GRA+VVH   DDLGKG
Sbjct: 71  GAPEDETRHAGDLGNVTVGDDGTASFTITDNQIPLTGPNSIIGRAVVVHADPDDLGKG 128


>IMGA|Medtr6g031060.1 Superoxide dismutase, copper/zinc binding
           chr06_pseudomolecule_IMGAG_V3 7035859-7031913 E
           EGN_Mt090430 20090702
          Length = 161

 Score =  136 bits (342), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 88/120 (73%), Gaps = 1/120 (0%)

Query: 76  GTSNVEGVVTLTQEDDGPTT-VNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNK 134
           G +NV G +   Q  +G  T V  ++TGL+PG HGFH+H  GDTTNGC STG HFNP  K
Sbjct: 16  GDNNVRGSLHFLQHPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKK 75

Query: 135 THGAPEDEIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELEDDLGKG 194
            HGAP D+ RHAGDLGNIVA  DGVAE +I D +IPLSG ++++GRA+VVH   DDLG+G
Sbjct: 76  DHGAPTDDERHAGDLGNIVAGPDGVAEISIRDGKIPLSGVHSILGRAVVVHADPDDLGRG 135


>IMGA|Medtr6g031060.2 Superoxide dismutase, copper/zinc binding
           chr06_pseudomolecule_IMGAG_V3 7035859-7031913 E
           EGN_Mt090430 20090702
          Length = 115

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 76  GTSNVEGVVTLTQEDDGPTT-VNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNK 134
           G +NV G +   Q  +G  T V  ++TGL+PG HGFH+H  GDTTNGC STG HFNP  K
Sbjct: 16  GDNNVRGSLHFLQHPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKK 75

Query: 135 THGAPEDEIRHAGDLGNIVANADGV 159
            HGAP D+ RHAGDLGNIVA  DG+
Sbjct: 76  DHGAPTDDERHAGDLGNIVAGPDGI 100


>IMGA|Medtr8g106410.1 Superoxide dismutase, copper/zinc binding;
           Heavy metal transport/detoxification protein
           chr08_pseudomolecule_IMGAG_V3 23853654-23858615 E
           EGN_Mt090430 20090702
          Length = 312

 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 8/108 (7%)

Query: 82  GVVTLTQEDDGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNKTHGAPED 141
           GVV L Q +     +    +GL+PG H + ++E+GD T G  STG  FNP N+     E+
Sbjct: 168 GVVRLAQVNMELARIEANFSGLSPGKHSWSINEFGDLTRGAASTGKVFNPLNE-----EN 222

Query: 142 EIRHAGDLGNIVANADGVAEATIVDNQIPLSGPNAVVGRALVVHELED 189
                GDLG +  N  G A  T V  ++ +S    ++GRA+V++  ED
Sbjct: 223 TKEPLGDLGTLDVNEKGEAFFTGVKEKLRVSD---LIGRAVVLYATED 267