Jatropha Genome Database

JcCB0247731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0247731.10 + phase: 0 /partial
         (187 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g077770.1 Diaminopimelate epimerase chr07_pseudomolec...   184   3e-47

>IMGA|Medtr7g077770.1 Diaminopimelate epimerase
           chr07_pseudomolecule_IMGAG_V3 16473695-16469850 E
           EGN_Mt090430 20090702
          Length = 239

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 118/186 (63%), Gaps = 41/186 (22%)

Query: 1   VDNRDSTEPRVTPEQAVKLCDRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGN 60
           +DNRDS+EP+++ E+ V+LCDRNF +GAD VIF +PG NGTDY+MRIFNSDGSEPE C  
Sbjct: 39  IDNRDSSEPKISSEKVVQLCDRNFSVGADEVIFVLPGINGTDYTMRIFNSDGSEPE-CDA 97

Query: 61  GVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLPA 120
            +  F              S  ++ G               +D             +L  
Sbjct: 98  LLNLFL-------------SLRVYRGG--------------ID-------------KLSP 117

Query: 121 NKDDAVVKSELNVDGETWNVTCVSMGNPHCVTFGTKENKDLLVDNLNLAEIGPKFEHHAV 180
           NKD A VKSE++VDG  WNVTCVSMGNPHC+TF  KE+++LLVD L LAEIGPKFEH+ +
Sbjct: 118 NKDHAAVKSEIDVDGVIWNVTCVSMGNPHCITFNRKESQNLLVDELKLAEIGPKFEHYEM 177

Query: 181 FPARTN 186
           FPARTN
Sbjct: 178 FPARTN 183