Jatropha Genome Database

JcCB0246261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0246261.10 - phase: 0 /pseudo/partial
         (69 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ; chr04_ps...   124   1e-29
IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanas...    86   6e-18

>IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ;
           chr04_pseudomolecule_IMGAG_V3 40981878-40992441 E
           EGN_Mt090430 20090702
          Length = 788

 Score =  124 bits (311), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 55/61 (90%)

Query: 1   LIAEAWDAGGLYQVGCFPHWQIWSEWNGKYRDIVRQFIKGTDGFSGAFAECLCGSPELIP 60
           LIAEAWDAGGLYQVG FPHW IWSEWNGKYRD VRQFIKGTDGF+GAFAEC+CGSP L  
Sbjct: 468 LIAEAWDAGGLYQVGTFPHWGIWSEWNGKYRDTVRQFIKGTDGFAGAFAECICGSPNLYQ 527

Query: 61  G 61
           G
Sbjct: 528 G 528


>IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanase,
           type I; ; ; chr03_pseudomolecule_IMGAG_V3
           39571747-39562313 E EGN_Mt090430 20090702
          Length = 672

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query: 1   LIAEAWDAGGLYQVGCFPHWQIWSEWNGKYRDIVRQFIKGTDGFSGAFAECLCGSPEL 58
           +IAE WD GGLY VG FP+W  W+EWNGKYRD +R+FIKG  G  G+FA  + GS +L
Sbjct: 492 IIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDIRKFIKGDSGMKGSFATRVSGSSDL 549