Jatropha Genome Database

JcCB0244361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0244361.20 - phase: 0 /pseudo/partial/short
         (50 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g043700.1 Ribosomal protein S7 chr03_pseudomolecule_I...    76   3e-15

>IMGA|Medtr3g043700.1 Ribosomal protein S7
          chr03_pseudomolecule_IMGAG_V3 11991327-11992046 E
          EGN_Mt090430 20090702
          Length = 157

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 41/50 (82%)

Query: 1  KKNCKIQ*IYCNRLVNTLINCILKHGQKSLAYQIIYRAMKKIQQKT*TNP 50
          KK  K   IY NRLVN L+N I+KHG+KSLAYQIIYRAMK+IQQKT TNP
Sbjct: 9  KKTAKSDPIYRNRLVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTKTNP 58