Jatropha Genome Database

JcCB0242921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242921.10 - phase: 1 /pseudo
         (185 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g103160.1 Myb, DNA-binding chr03_pseudomolecule_IMGAG...   317   2e-87

>IMGA|Medtr3g103160.1 Myb, DNA-binding chr03_pseudomolecule_IMGAG_V3
           25323248-25328549 E EGN_Mt090430 20090702
          Length = 464

 Score =  317 bits (812), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 170/183 (92%), Gaps = 1/183 (0%)

Query: 1   SGRPSLNLERRLDHDGHPLAITAPDAVAASGVPPWNWRETPGNGPENQSFGGRVITVKYL 60
           SGRP+LNLER LDHDGHPLAI A   VAASGVPPWNWRETPGNG E+QS  GRVI+VK+ 
Sbjct: 207 SGRPTLNLERSLDHDGHPLAIAA-ADVAASGVPPWNWRETPGNGGESQSCCGRVISVKWG 265

Query: 61  DYTRRVGVDGTTDAIKEAIKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGL 120
           DYTRR+G+DGT +AIKEAI++AFRLRTKRAFWLEDE+QIIRS+DRDMP+GNYTLHLDEG+
Sbjct: 266 DYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGM 325

Query: 121 AVKVCLYDESDHMPVHTEEKVFYTEDDYRDFLTRRGWTCLREFDGYRNVDNMDDLRPGAL 180
           A+KVCLYDESDH+PVHTEEK+FYTEDDYRDFL RR WT LREFDGYRN+DNMDDLRPGA+
Sbjct: 326 AIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLARRAWTGLREFDGYRNIDNMDDLRPGAI 385

Query: 181 YRG 183
           YRG
Sbjct: 386 YRG 388