Jatropha Genome Database

JcCB0242781.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.20 + phase: 0 /partial
         (170 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g029040.1 hypothetical protein chr02_pseudomolecule_I...    57   5e-09

>IMGA|Medtr2g029040.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 7626217-7625715 H
           EGN_Mt090430 20090702
          Length = 138

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 38/48 (79%)

Query: 21  DSPSSYQDLEEIAKKERQRIEELLRSKGMKYGSYPRFTVALKGQKVTI 68
           +  +S +D++EIA KERQRI++LL +KG++  S PRF VA+KGQKV +
Sbjct: 84  EQANSNEDVQEIAIKERQRIQDLLTTKGIRPSSVPRFNVAVKGQKVIL 131