Jatropha Genome Database

JcCB0242781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0242781.10 + phase: 1 /partial
         (352 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g029070.1 hypothetical protein chr02_pseudomolecule_I...   228   3e-60
IMGA|Medtr8g147340.1 hypothetical protein chr08_pseudomolecule_I...   197   9e-51

>IMGA|Medtr2g029070.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 7638825-7637563 E
           EGN_Mt090430 20090702
          Length = 347

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 145/334 (43%), Positives = 181/334 (54%), Gaps = 24/334 (7%)

Query: 33  SSDSNSPEFEFWMLQNPSFPEPNLLSADELFVDGVX-------XXXXXXXXXXXXXXXXX 85
           +S+ NSPEFEFWML+NPSFP+PNL +AD+LFV+GV                         
Sbjct: 16  NSNCNSPEFEFWMLRNPSFPQPNLHTADQLFVNGVILPLHLLPTTSKTDPPPQTPTSNPS 75

Query: 86  XXXXXXXXDFEPQLELGPQISYETIAAESAAPLTASKRWKDIFKKSDKKTATAQNQXXXX 145
                   D EP           T ++ SA+  + SKRWKDIF+K +K     + +    
Sbjct: 76  SHNPVSEPDPEPDSSHPESSPVITESSSSASTFSGSKRWKDIFRKGEKNNTEDKEKEKEK 135

Query: 146 XXXXXXXXXXSQ----SGATSGAELNINIWPFARSRSEGNSASRPRMFPGAPGARKVSSA 201
                      +    +GA S AELNINIWPF+RSRS GN+ +RP+ F GAP  RKV+SA
Sbjct: 136 EKEKKNKDKKKERKNGNGANSAAELNINIWPFSRSRSAGNTTTRPKFFTGAPVTRKVNSA 195

Query: 202 PCSRSNSAGESKSRKWPTSPGRGGVHLGRSSPVWQVRRGAAGGWSSKSVYSEPVSRNSEK 261
           PCSRSNSAGESKSRKWP+SPGR GVH+GR+SPVWQVRRG  GG +S     +    N++K
Sbjct: 196 PCSRSNSAGESKSRKWPSSPGRAGVHVGRNSPVWQVRRG--GGKNSDQQTQQ--GSNTDK 251

Query: 262 GMSKKVTDRPRKTAAXXXXXXXXXKAKVVNLNVPTCIGYRQQLSCRSHESSGI-----RD 316
            + K+ T   R             KAKV++LNVP CIGYR  LSCRS E+S I       
Sbjct: 252 ELKKEATVSRRSKVVSGGGG----KAKVLSLNVPMCIGYRHHLSCRSDENSAIGVSGGVA 307

Query: 317 CTXXXXXXXXXXXXXXXXXXXXHFFNLRSLFTKK 350
                                 + FNLR+LFTKK
Sbjct: 308 VNRGGGDGGGGECHHHDEGSGGNLFNLRNLFTKK 341


>IMGA|Medtr8g147340.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 36252949-36251878 E
           EGN_Mt090430 20090702
          Length = 294

 Score =  197 bits (500), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 130/340 (38%), Positives = 167/340 (49%), Gaps = 70/340 (20%)

Query: 23  LLSPCSGGRRSSDSNSPEFEFWMLQNPSFPEPNLLSADELFVDGVXXXXXXXXXXXXXXX 82
           LLS  S  + +++ +SPEFEFWML+NPSFP+PN++ AD+LF++GV               
Sbjct: 12  LLSSTSRRKCNNECSSPEFEFWMLRNPSFPQPNIIPADQLFLNGV--------------- 56

Query: 83  XXXXXXXXXXXDFEPQLELGPQISYETIAA-ESAAPLT---------ASKRWKDIFKKSD 132
                         P   L  Q  ++ +    S+ P+T          SKRWK+IF K +
Sbjct: 57  ------------ILPLHLLSTQNKHDPVPEPNSSPPITDGLTITTTTTSKRWKNIFMKKN 104

Query: 133 KKTATAQNQXXXXXXXXXXXXXXSQSGATSGAELNINIWPFARSRSEGNSASRPRMFPGA 192
             T     +              S       AELNINIWPF+RSRS GNS SRP+   GA
Sbjct: 105 NNTEEKVKKKEKRVGN-------SGGAGGGSAELNINIWPFSRSRSSGNSVSRPKSSTGA 157

Query: 193 PGARKVSSAPCSRSNSAGESKSRKWPTSPGRGGVHLGRSSPVWQVRRGAAGGWSSKSVYS 252
           P  RKV+SAPCSRSNSAG+SKSRK P+SP R GVHLGRSSPVWQVR  A           
Sbjct: 158 PVTRKVNSAPCSRSNSAGDSKSRKLPSSPARVGVHLGRSSPVWQVRHAAKN--------- 208

Query: 253 EPVSRNSEKGMSKKVTDRPRKTAAXXXXXXXXXKAKVVNLNVPTCIGYRQQLSCRSHESS 312
              + N +K   +  T R  +  +         KAKV+NL+VP C+GY   +S R  E+S
Sbjct: 209 ---TVNPDKSKRETTTSRRSRFTSTTGGGGGSGKAKVLNLSVPMCVGYSHNISYRIEENS 265

Query: 313 GIRDCTXXXXXXXXXXXXXXXXXXXXHFFNLRSLFTKKVY 352
                                       FNLR+ FTKK +
Sbjct: 266 N--------------SVSNGGGGGGGKLFNLRTFFTKKTF 291