Jatropha Genome Database

JcCB0240711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0240711.10 + phase: 2 /partial
         (71 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g129740.1 TRAM, LAG1 and CLN8 homology chr04_pseudomo...    67   2e-12

>IMGA|Medtr4g129740.1 TRAM, LAG1 and CLN8 homology
           chr04_pseudomolecule_IMGAG_V3 30931961-30926355 E
           EGN_Mt090430 20090702
          Length = 433

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 18  IYYYVFNTLLYCLLVLHIYWWVLIYRMLVKQIQARGQISEDVRSD 62
           + YYVFNTLL  LL+ H+YWW+LIY M+ +Q++ RG++ ED+RSD
Sbjct: 320 LLYYVFNTLLIMLLIFHVYWWMLIYAMINRQLKNRGKVGEDIRSD 364