Jatropha Genome Database

JcCB0237301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0237301.10 + phase: 2 /pseudo/partial
         (507 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g144520.1 emp24/gp25L/p24; Cellular retinaldehyde bin...   256   3e-68
IMGA|Medtr7g076560.1 Patellin-5, related chr07_pseudomolecule_IM...   229   3e-60
IMGA|Medtr4g096250.1 Cellular retinaldehyde binding/alpha-tocoph...    51   2e-06
IMGA|Medtr4g096300.1 Cellular retinaldehyde binding/alpha-tocoph...    50   3e-06

>IMGA|Medtr4g144520.1 emp24/gp25L/p24; Cellular retinaldehyde
           binding/alpha-tocopherol transport; Cellular
           retinaldehyde-binding/triple function, N-terminal
           chr04_pseudomolecule_IMGAG_V3 36413995-36417466 E
           EGN_Mt090430 20090702
          Length = 503

 Score =  256 bits (653), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 141/340 (41%), Positives = 204/340 (60%), Gaps = 35/340 (10%)

Query: 174 VEKAEPDQKVDRD-IAIWGVPLLPSKGDDRTDVLLLKFLRAREFKANDAFEMLKNSLQWR 232
           VEK E    +  + ++I+G+PLL    D+ +DV+LLKFLRAR+FK  +AF M+KN++ WR
Sbjct: 151 VEKVEASLPLPPEQVSIYGIPLL---ADETSDVILLKFLRARDFKVKEAFTMIKNTILWR 207

Query: 233 KENKIDSILEEDLEADLGSMAYIAGNDRDGHPICYNIFAVLGNDDLYGKAF--EEKRGKF 290
           KE  I+ +++E L  +L  + Y+ G D++GHP+CYNI+    N +LY K F  EEKR  F
Sbjct: 208 KEFGIEELMDEKLGDELEKVVYMHGFDKEGHPVCYNIYGEFQNKELYNKTFSDEEKRHNF 267

Query: 291 MRSRIQLMEKTIQKLDFNPGGVSATLQINDLKNTPLPTKKELRIATKKAVDLLQDNYPEF 350
           ++ RIQ +EK+I+ LDFN GGV   + +NDLK++P P K ELR ATK+A+ L QDNYPEF
Sbjct: 268 LKWRIQFLEKSIRNLDFNHGGVCTIVHVNDLKDSPGPGKWELRQATKQALQLFQDNYPEF 327

Query: 351 VSKNSVSKSQEQTHLCSNSKSNRHLAQ---------------SSMVGLNAKTMLNSQF-- 393
           V+K  V  +    +L  N   +  L Q                +++   A   L  ++  
Sbjct: 328 VAKQ-VFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLSYIAPEQLPVKYGG 386

Query: 394 ---------KDDVKEAVVKAGSEETIEIQAVEVGSTLIWDVTVSGWEVNYKEEFVPTDEG 444
                     D V E  ++  S+ T+E    E    L W+V V GWEV Y  EFVP++EG
Sbjct: 387 LSKDGEFGNSDSVTEITIRPASKHTVEFPVTE-KCLLSWEVRVIGWEVRYGAEFVPSNEG 445

Query: 445 SYTIIVQKGRRIA-YQEGTIRNTFTNKEPGKIVITIENGA 483
           SYT+IVQK R++A  +E  + N+F   EPGK+V+TI+N +
Sbjct: 446 SYTVIVQKARKVASSEEAVLCNSFKINEPGKVVLTIDNTS 485


>IMGA|Medtr7g076560.1 Patellin-5, related
           chr07_pseudomolecule_IMGAG_V3 15618126-15621973 E
           EGN_Mt090430 20090702
          Length = 436

 Score =  229 bits (584), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 201/344 (58%), Gaps = 44/344 (12%)

Query: 175 EKAEPDQKVDRDIAIWGVPLLPSKGDDRTDVLLLKFLRAREFKANDAFEMLKNSLQWRKE 234
           EK     ++  + ++WGV L+  KGDD  DVLLLKFLRAR+F+ NDA+ ML   L WRKE
Sbjct: 71  EKLLASDEITNNGSMWGVCLI--KGDDVADVLLLKFLRARDFRVNDAYTMLVKCLSWRKE 128

Query: 235 NKIDSILEEDL---EADLGSMAYIAGNDRDGHPICYNIFAVLGNDDLYGKAF--EEKRGK 289
              +++++EDL   E + G +A+  G DR+GHP+CYN + V  + ++Y + F  EEK  K
Sbjct: 129 FGAENVVDEDLGFKELE-GVVAFTHGFDREGHPVCYNHYGVFKDKEMYERVFGDEEKLKK 187

Query: 290 FMRSRIQLMEKTIQKLDFNPGGVSATLQINDLKNTPLPTKKELRIATKKAVDLLQDNYPE 349
           F+R R+Q++E+ I+ L F PGGV++ +Q+ DLK+ P   K ELR+ + + + L QDNYPE
Sbjct: 188 FLRWRVQVLERGIKLLQFKPGGVNSLIQVTDLKDMP---KSELRVVSNQIMSLFQDNYPE 244

Query: 350 FVSKN---------SVSKSQEQTHLCSNSKSNRHLAQSSMVGLNAKTMLN---------- 390
            V++          S+  S     L   +KS   +++    G  A+T+            
Sbjct: 245 MVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKE---GNAAETLYKFIRPENIPIQ 301

Query: 391 -------SQFKDD----VKEAVVKAGSEETIEIQAVEVGSTLIWDVTVSGWEVNYKEEFV 439
                  S F++       E  VK G +  I+I+ VE G+T+ W++ V GW++ Y  EFV
Sbjct: 302 YGGLSRPSDFQNGPPKLASEFTVKGGEKVNIQIEGVESGATIKWEIVVGGWDLEYSAEFV 361

Query: 440 PTDEGSYTIIVQKGRRIAYQEGTIRNTFTNKEPGKIVITIENGA 483
           P  E SYTI V+K R++   E  I+N++T+KE G +V++++N A
Sbjct: 362 PNAEASYTIEVEKARKVNASEEAIQNSYTSKEAGIMVLSVDNSA 405


>IMGA|Medtr4g096250.1 Cellular retinaldehyde
           binding/alpha-tocopherol transport; Cellular
           retinaldehyde-binding/triple function, N-terminal
           chr04_pseudomolecule_IMGAG_V3 20199383-20202604 E
           EGN_Mt090430 20090702
          Length = 565

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 20/173 (11%)

Query: 194 LLPSKGDDRTDVLLLKFLRAREFKANDAFEMLKNSLQWRKENKIDSIL-EEDLEADLGSM 252
           LLPSK DD    ++L+FLRAR+F      +M  + LQWR+E   D+I+ + + E     +
Sbjct: 86  LLPSKHDDHH--MMLRFLRARKFDIEKTKQMWADMLQWRREFGADTIMEDFEFEEVDEVL 143

Query: 253 AYIA----GNDRDGHPICYNIFAVLGNDDLYGKAFEEKRGKFMRSRIQLMEKTIQKLDFN 308
            Y      G D+DG P+      ++ ++ L      +   ++++  ++  EKT   +   
Sbjct: 144 KYYPQGTHGVDKDGRPVYIERLGLVDSNKLMQVTTMD---RYLKYHVREFEKT-SNVKMP 199

Query: 309 PGGVSATLQINDLKNTPLPTKK-ELRIATKKAVDLLQ-------DNYPEFVSK 353
              ++A   I D   T L  +   L+   K A DL+Q       DNYPE +++
Sbjct: 200 ACSIAAKKHI-DQSTTILDVQGVGLKSMNKAARDLIQRLQKIDGDNYPESLNR 251


>IMGA|Medtr4g096300.1 Cellular retinaldehyde
           binding/alpha-tocopherol transport; Cellular
           retinaldehyde-binding/triple function, N-terminal
           chr04_pseudomolecule_IMGAG_V3 20226833-20224331 E
           EGN_Mt090430 20090702
          Length = 369

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 194 LLPSKGDDRTDVLLLKFLRAREFKANDAFEMLKNSLQWRKENKIDSILEEDLEAD----- 248
           LLP K DD    ++L+FL+AR+F    A  M  + L+WRKE   D+I+ ED E +     
Sbjct: 74  LLPQKHDDYH--MMLRFLKARKFDIGKAKHMWADMLEWRKEFGADTIM-EDFEFNELNEV 130

Query: 249 --LGSMAYIAGNDRDGHPICYNIFAVLGNDDLYGKAFEEKRGKFMRSRIQLMEKTIQKLD 306
                  Y  G D++G P+    F  L  + L      ++  K+   R + M      + 
Sbjct: 131 IKYNPHGY-HGVDKEGRPVFIERFEKLDRNKLMQVTTIDRYVKYHAQRCEEM----HAIK 185

Query: 307 FNPGGVS------ATLQINDLKNTPLPTKKEL-RIATKKAVDLLQDNYPE 349
           F    ++      +++ I DL+       +E  R   K+ + +L DNYP+
Sbjct: 186 FPACTIASKRHIDSSITILDLQGIGFCNLEEADREIMKRFLKILIDNYPQ 235