Jatropha Genome Database

JcCB0236281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0236281.10 + phase: 1 /pseudo/partial
         (392 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g090120.1 FAS1 chr07_pseudomolecule_IMGAG_V3 20032677...   159   2e-39

>IMGA|Medtr7g090120.1 FAS1 chr07_pseudomolecule_IMGAG_V3
           20032677-20026683 E EGN_Mt090430 20090702
          Length = 685

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 218 AIKKQASIMERFLKRSKTDSPCQNEGTSIEETAPVLSGKKSEKMPEAVTMAMDCTLSSNX 277
           +++KQ SIMERFLKRSK +   Q++  S E TA  L   K+E +  + T++MD  L+S+ 
Sbjct: 181 SLQKQVSIMERFLKRSKPNPSVQSDKVSTEPTASDLLSSKNESVSMSATLSMDSVLASSS 240

Query: 278 XXXXXXXXKLHLSSWHHLGHAIRSNRKQHWSIRQKPKTELFKELKLTTARELSHDGELIV 337
                   K H  SWH LG +IRSNRKQ W +RQ PKTE F +LKLT  +   H+ EL  
Sbjct: 241 DIKPEDLRKSHFHSWHSLGQSIRSNRKQRWGLRQNPKTEAFNKLKLTDTKSAIHEDELGT 300

Query: 338 EKLESEWGEQSSDDRLCATNLESS-LNDKKWKRRKKLLQFDKSHRPAFYGIWPKK 391
           EK     GE S D   C+ N +S+ L+ KK+ R ++LLQFD + RPAFYG WP K
Sbjct: 301 EKDADRLGESSPDGNSCSMNADSTHLDAKKYYRGRQLLQFDNTPRPAFYGFWPVK 355