Jatropha Genome Database

JcCB0235721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0235721.10 - phase: 0 /partial
         (530 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025560.1 hypothetical protein chr08_pseudomolecule_I...   110   2e-24
IMGA|Medtr5g009660.1 hypothetical protein chr05_pseudomolecule_I...    55   6e-08

>IMGA|Medtr8g025560.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 5217804-5214751 E
           EGN_Mt090430 20090702
          Length = 623

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 103/195 (52%), Gaps = 19/195 (9%)

Query: 1   HFADLLAAQFCSLMIREGYLVEDN-IQPKPTQMNIASTSQPIAVGIPPNNSAAEVQKYNE 59
           HFADLLA QF S +  +GY+ ED+ IQ +P  +N+   SQ     +PPN    E+Q+Y E
Sbjct: 117 HFADLLADQFSSQIEHDGYVKEDDRIQVRPNLVNLPLGSQ---SSLPPN----EMQQYGE 169

Query: 60  AVSAQAPNDIKPSLSG-NASINPSQNLLANARMLPPGNPKALPMSQGLVSAVSMAARXXX 118
            +  Q+ N+      G NAS+N  Q+L+ANARMLPPGNP+ L MSQ L+S VSMA R   
Sbjct: 170 PIPGQSNNEAAKLAGGSNASLNLPQSLVANARMLPPGNPQGLQMSQALLSGVSMAQR--- 226

Query: 119 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAMMLPSNSLSHLNALGQ 178
                                                    RS  +L +N LSHLN +GQ
Sbjct: 227 -----PQQLDSQQAVLQQQQQQQQLQQNQHSLLQQQNPQFQRS--LLSANQLSHLNGVGQ 279

Query: 179 NSNMQLGNHMVNKPS 193
           NSNM LGNH++NK S
Sbjct: 280 NSNMPLGNHLLNKAS 294



 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 7/110 (6%)

Query: 267 NVGQNSMNLGQASSITNVISQQIRAGQMSQAQAAFLTSKLRM---RPSILGPSQSGIAGM 323
           N+GQN M+LGQAS+I+N ISQQ R G M   Q   L SKLR+   R  + G  QS IA M
Sbjct: 373 NIGQNPMSLGQASNISNSISQQYRPGTMHSNQE--LLSKLRLVHNREGMSGSPQSSIASM 430

Query: 324 SGARQIQPGSASLSMLGQSLNRANMNPMQRSAIGPMGPPKLMAGVNLYVN 373
           SGARQ+ P S++  +     NR NM+ +QR A+GPMGPPKLM  ++LY+N
Sbjct: 431 SGARQMHP-SSASLLSQSLSNRTNMSTLQR-AMGPMGPPKLMPAMSLYMN 478



 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 426 DPSSSLQAVVSPPQVGSPSTMVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGAIHA 485
           + +S LQAVVSPPQVGSPSTM +                             +SSGAIH 
Sbjct: 521 ETTSQLQAVVSPPQVGSPSTMGVSSLSQQTHQQASPQQMSQRTPMSPQQ---MSSGAIHG 577

Query: 486 MSAGNPEACPASPQLSSQTLGSVGSITNSPMELQG 520
           M+AGNPE  PASPQLSSQTLGSV SITNSPM++QG
Sbjct: 578 MNAGNPEG-PASPQLSSQTLGSVSSITNSPMDMQG 611


>IMGA|Medtr5g009660.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 2167890-2170979 E
           EGN_Mt090430 20090702
          Length = 88

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 27/31 (87%)

Query: 486 MSAGNPEACPASPQLSSQTLGSVGSITNSPM 516
           MS GNPEACPAS QLSS+ LGSVGSITNSP 
Sbjct: 1   MSTGNPEACPASSQLSSEALGSVGSITNSPY 31