Jatropha Genome Database

JcCB0234681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234681.10 + phase: 0 /partial
         (152 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g046070.1 Transcription factor, MADS-box; Transcripti...    86   8e-18

>IMGA|Medtr1g046070.1 Transcription factor, MADS-box; Transcription
           factor, K-box chr01_pseudomolecule_IMGAG_V3
           10653449-10650286 E EGN_Mt090430 20090702
          Length = 232

 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 47/180 (26%)

Query: 2   RMQQIIERYQKVKGTSI-PEHDSR--------------------------MKRYMGEDMS 34
           RM QIIERY++  G  I  EHD                            ++RY+G+DM 
Sbjct: 63  RMDQIIERYERSTGKRIMAEHDDHQIHPRELEMFHDMAMLRQESLRLELGIQRYLGDDMK 122

Query: 35  SIPFXXXXXXXXXXXRSVAKVRNRKNELLQQQLDNLHRKERMLEEENGNMYRWIQDHRVA 94
            + F            S+AKVRNR+NEL+QQQ++NL RKER+L++EN N+  W  +H+  
Sbjct: 123 DLQFDDLSKIEHELEISLAKVRNRQNELMQQQMENLQRKERILQDENMNLSNW--EHKAV 180

Query: 95  MEYQHATLEAKPVEHQQVLDQFPFCGEP--SSVLQLGTIHSQIHSYHLQLAQPNLQGSSI 152
           M            E++ V+DQF F  +   S +LQL    + ++ Y LQL QP  Q  ++
Sbjct: 181 M------------ENKAVMDQFAFFEDQPLSRILQLA---APVNPY-LQLGQPVFQDYNL 224