Jatropha Genome Database

JcCB0234411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234411.10 - phase: 0 /pseudo
         (80 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g159480.1 WD40-like chr03_pseudomolecule_IMGAG_V3 417...    80   3e-16

>IMGA|Medtr3g159480.1 WD40-like chr03_pseudomolecule_IMGAG_V3
          41738916-41743736 E EGN_Mt090430 20090702
          Length = 378

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSV ELK RH+AATETVN                        +AGYA++QG+ PV+FGPT
Sbjct: 1  MSVTELKERHIAATETVNNLRERLKQRRLSLLDTD-------IAGYAKSQGRTPVTFGPT 53

Query: 61 DLVCCRTLQGHTGKV 75
          D++CCRTLQGHTGKV
Sbjct: 54 DILCCRTLQGHTGKV 68