Jatropha Genome Database

JcCB0231181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.20 - phase: 1 /partial
         (133 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g024110.1 Zinc finger, CCCH-type chr01_pseudomolecule...    99   5e-22
IMGA|Medtr8g090190.1 Zinc finger, CCCH-type chr08_pseudomolecule...    77   2e-15

>IMGA|Medtr1g024110.1 Zinc finger, CCCH-type
           chr01_pseudomolecule_IMGAG_V3 5598014-5592926 E
           EGN_Mt090430 20090702
          Length = 433

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 3/85 (3%)

Query: 33  KDVNYYKNLIQQHGGERQET-PHQYSSRYSHQIGSNPELV-NPKSRDAKPKIMKPCIYFN 90
           KDVNYYK+LIQQHGG++QE  P+  S+R + Q  SN + V N +++ +KPKI KPCI+FN
Sbjct: 309 KDVNYYKSLIQQHGGDKQEALPYSSSNRQNQQPLSNYDTVHNFRAKGSKPKISKPCIFFN 368

Query: 91  SSRGCRHGANCAYQHDTS-SPQRSS 114
           SSRGCR+GANC +QHD S  PQ+ S
Sbjct: 369 SSRGCRNGANCTFQHDASFQPQQVS 393


>IMGA|Medtr8g090190.1 Zinc finger, CCCH-type
           chr08_pseudomolecule_IMGAG_V3 19613197-19605047 E
           EGN_Mt090430 20090702
          Length = 557

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 14/103 (13%)

Query: 32  VKDVNYYKNLIQQHGGERQETPHQYSSRYSHQIGS------NPELV-NPKSRDAKPKIMK 84
           VKDVNYYKNLI+QHG + Q+       +   QIGS      + +L  N    + K K  K
Sbjct: 462 VKDVNYYKNLIRQHGADGQD-------KLDSQIGSHHSNFQDMKLAHNNNQGEVKYKSKK 514

Query: 85  PCIYFNSSRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKM 127
            CIYFNSSRGCR+G++C +QHD S+   + +    Q+AKR K+
Sbjct: 515 QCIYFNSSRGCRNGSDCPFQHDVSAESGAGNFLGGQSAKRFKL 557