Jatropha Genome Database

JcCB0231181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.10 - phase: 0 
         (236 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g016220.1 hypothetical protein chr01_pseudomolecule_I...   200   4e-52

>IMGA|Medtr1g016220.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 3095747-3093004 E
           EGN_Mt090430 20090702
          Length = 128

 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 95/121 (78%), Positives = 103/121 (85%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60
           MLKFLS+V++EFNALDPR ASCMEFLAQCN+RKAKESNPAC+V VKR   +HPPQITVTF
Sbjct: 1   MLKFLSRVKVEFNALDPRTASCMEFLAQCNSRKAKESNPACEVEVKRGNVEHPPQITVTF 60

Query: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKV 120
           VNGVEE FD T  P   I  MILEKGQLLETEQMFREAGE+WPVIIP+EEL   APGTK 
Sbjct: 61  VNGVEEAFDATSTPVHRITRMILEKGQLLETEQMFREAGEQWPVIIPDEELSQHAPGTKP 120

Query: 121 R 121
           R
Sbjct: 121 R 121