Jatropha Genome Database

JcCB0229021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229021.10 + phase: 0 /pseudo/partial
         (307 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g013080.1 hypothetical protein chr04_pseudomolecule_I...    98   6e-21

>IMGA|Medtr4g013080.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 2477778-2479856 E
           EGN_Mt090430 20090702
          Length = 385

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 14/131 (10%)

Query: 44  RLMGLDSLPDTNRI--PTNGNTVTRSRSVNFMDYLFEFDLSQAHHRRVKTSLSFRDVPTL 101
           RLMGLDSLP T R+   T  ++V RS+SVNF+DYL EFD +   HRRVKTS SFR+VP++
Sbjct: 60  RLMGLDSLPSTKRVVQGTTLDSVPRSKSVNFVDYLLEFDKNMGSHRRVKTSASFREVPSM 119

Query: 102 QNQKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEESNKKEEKGAVDVRKEKKNQRNNNL 161
             +K +  F+L +D+            +K +V  E       K    VR +K+  +  N 
Sbjct: 120 VEKKKSFLFVLDIDD------------KKGKVQEENDANLRRKSKETVRVKKEKNQGKNK 167

Query: 162 KISKLKDEPRK 172
           KISKLKDEPR+
Sbjct: 168 KISKLKDEPRR 178