Jatropha Genome Database

JcCB0224951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224951.10 - phase: 0 /partial
         (205 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g148020.1 Isocitrate dehydrogenase NAD-dependent, mit...   375   e-104
IMGA|Medtr1g076710.1 Isocitrate/isopropylmalate dehydrogenase ch...   365   e-102
IMGA|Medtr8g088400.1 Isocitrate/isopropylmalate dehydrogenase ch...   212   1e-55
IMGA|Medtr5g023610.1 Isocitrate dehydrogenase NAD-dependent, mit...   210   3e-55
IMGA|Medtr8g088400.2 Isocitrate/isopropylmalate dehydrogenase ch...   202   1e-52

>IMGA|Medtr3g148020.1 Isocitrate dehydrogenase NAD-dependent,
           mitochondrial chr03_pseudomolecule_IMGAG_V3
           38483952-38479533 E EGN_Mt090430 20090702
          Length = 353

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/193 (91%), Positives = 187/193 (96%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           VF+AAEVPI WEEHYVGT IDPRT+SFLTWESLESVR+N+VGLKGPMATPIGKGHRSLNL
Sbjct: 44  VFQAAEVPIEWEEHYVGTTIDPRTQSFLTWESLESVRKNRVGLKGPMATPIGKGHRSLNL 103

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
           TLRKELNLYANVRPCYSLPGYKTRYD+V+LITIRENTEGEYSGLEHQVVRGVVES+KIIT
Sbjct: 104 TLRKELNLYANVRPCYSLPGYKTRYDNVDLITIRENTEGEYSGLEHQVVRGVVESIKIIT 163

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
           RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVA KYPEI YEEVVI
Sbjct: 164 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVANKYPEIVYEEVVI 223

Query: 181 DNCCMMVCESLSL 193
           DNCCMM+ ++ +L
Sbjct: 224 DNCCMMLVKNPAL 236


>IMGA|Medtr1g076710.1 Isocitrate/isopropylmalate dehydrogenase
           chr01_pseudomolecule_IMGAG_V3 15387464-15381789 E
           EGN_Mt090430 20090702
          Length = 358

 Score =  365 bits (937), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/193 (88%), Positives = 184/193 (95%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           +F+AA+  I WEEHYVGTE+DPRT+SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL
Sbjct: 49  IFQAADAQIEWEEHYVGTEVDPRTKSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 108

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
           TLRKELNLYANVRPCYSL GYKTRYD+V+LITIRENTEGEYSGLEHQVVRGVVES+KIIT
Sbjct: 109 TLRKELNLYANVRPCYSLNGYKTRYDNVDLITIRENTEGEYSGLEHQVVRGVVESIKIIT 168

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
           RQAS+RVAEYAFHYAK HGR+RVSAIHKANIMQKTDGLFLKCCREVAEKYPEI YEEVVI
Sbjct: 169 RQASIRVAEYAFHYAKEHGRKRVSAIHKANIMQKTDGLFLKCCREVAEKYPEIVYEEVVI 228

Query: 181 DNCCMMVCESLSL 193
           DNCCMM+ ++  L
Sbjct: 229 DNCCMMLVKNPGL 241


>IMGA|Medtr8g088400.1 Isocitrate/isopropylmalate dehydrogenase
           chr08_pseudomolecule_IMGAG_V3 18715358-18720848 F
           EGN_Mt090430 20090702
          Length = 371

 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 140/187 (74%), Gaps = 5/187 (2%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           +  A   P+ +E+  V  ++       +  E LES+R+NKV LKG + TP+G G  SLN+
Sbjct: 63  LMEAMHAPVYFEKFDVHGDM-----KAVPTEVLESIRKNKVCLKGGLVTPMGGGVSSLNV 117

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
            LRKEL+LYA++  C++LPG  TR+D+V+++ IRENTEGEY+GLEH+VV GVVESLK+IT
Sbjct: 118 QLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 177

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
           +  S R+A+YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA KYP IKY E+++
Sbjct: 178 KFCSERIAKYAFEYAYLNNRKQVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIV 237

Query: 181 DNCCMMV 187
           DNCCM +
Sbjct: 238 DNCCMQL 244


>IMGA|Medtr5g023610.1 Isocitrate dehydrogenase NAD-dependent,
           mitochondrial chr05_pseudomolecule_IMGAG_V3
           9296836-9292742 E EGN_Mt090430 20090702
          Length = 376

 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 140/187 (74%), Gaps = 5/187 (2%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           V  A   P+++E+  V   +       +  E +ES+++NKV LKG +ATP+G G  SLNL
Sbjct: 59  VMEAMHAPVLFEKFEVHGNMKA-----IPSEVMESIKKNKVCLKGGLATPMGGGVSSLNL 113

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
            LRKEL+LYA++  C++L G  TR+D+V+++ IRENTEGEY+GLEH+VV GVVESLK+IT
Sbjct: 114 QLRKELDLYASLVNCFNLEGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
           +  S R+A+YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA KYP IKY E+++
Sbjct: 174 KFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIV 233

Query: 181 DNCCMMV 187
           DNCCM +
Sbjct: 234 DNCCMQL 240


>IMGA|Medtr8g088400.2 Isocitrate/isopropylmalate dehydrogenase
           chr08_pseudomolecule_IMGAG_V3 18715358-18720848 F
           EGN_Mt090430 20090702
          Length = 367

 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/187 (52%), Positives = 136/187 (72%), Gaps = 9/187 (4%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           +  A   P+ +E+  V  ++       +  E LES+R+NKV LKG + TP+G G  SLN+
Sbjct: 63  LMEAMHAPVYFEKFDVHGDM-----KAVPTEVLESIRKNKVCLKGGLVTPMGGGVSSLNV 117

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
            LRKEL+LYA++  C++LPG  TR+D+V+++ IRENTEGEY+GLEH+VV GVVESLK   
Sbjct: 118 QLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKF-- 175

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
              S R+A+YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA KYP IKY E+++
Sbjct: 176 --CSERIAKYAFEYAYLNNRKQVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIV 233

Query: 181 DNCCMMV 187
           DNCCM +
Sbjct: 234 DNCCMQL 240