Jatropha Genome Database

JcCB0224701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224701.10 + phase: 2 /partial
         (223 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g010080.1 MECDP-synthase chr05_pseudomolecule_IMGAG_V...   249   7e-67

>IMGA|Medtr5g010080.1 MECDP-synthase chr05_pseudomolecule_IMGAG_V3
           2402451-2407020 E EGN_Mt090430 20090702
          Length = 233

 Score =  249 bits (636), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 117/145 (80%), Positives = 127/145 (87%)

Query: 79  AVAGTTVVQVDALATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHSD 138
           A   TT +++D    S+   + LPFRVGHGFDLHRLEPGYPLIIGGIN+PHDRGCEAHSD
Sbjct: 53  AATPTTSIEIDKSPISATPSRVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSD 112

Query: 139 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIQEAVRLMHEAGYDIGNLDA 198
           GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKG  SSVF+ E+VRLMHEAGYDIGNLDA
Sbjct: 113 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDA 172

Query: 199 TLILQRPKLSPHKEAIRENLCKLLG 223
           TLILQRPKLSPHK+AI+ NL  LLG
Sbjct: 173 TLILQRPKLSPHKDAIKANLSALLG 197