Jatropha Genome Database

JcCB0224421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224421.10 - phase: 0 /partial
         (136 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g014750.4 Metallo-dependent hydrolase, composite chr0...    95   8e-21
IMGA|Medtr2g014750.3 Metallo-dependent hydrolase, composite chr0...    95   1e-20
IMGA|Medtr2g014750.2 Urease, gamma/beta/alpha type chr02_pseudom...    87   2e-18
IMGA|Medtr2g014750.1 Dihydroorotase region chr02_pseudomolecule_...    87   2e-18

>IMGA|Medtr2g014750.4 Metallo-dependent hydrolase, composite
           chr02_pseudomolecule_IMGAG_V3 3872068-3865685 E
           EGN_Mt090430 20090702
          Length = 387

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 66/106 (62%), Gaps = 10/106 (9%)

Query: 1   MDNLQWRIXXXXXXXXXXXXXXYVQNSS-KLSHGDCSLLPYKHYWITSKSIVTPQGIISG 59
           MD L WR+              Y+Q+   KL   +CSLLPY HYWI+SK I+T QG ISG
Sbjct: 1   MDQLLWRVLPLLTLLISFSLFFYLQSPIIKLPGDECSLLPYSHYWISSKRILTSQGFISG 60

Query: 60  AVEVKEGNIVSIVKEEDWQGYSKRG----PILDYGEAVVMPGLIDV 101
           +VE+ EG IVSIV     +GY K+      ++DYG+AVVMPGLIDV
Sbjct: 61  SVEINEGKIVSIV-----EGYGKKDNSVHQVIDYGDAVVMPGLIDV 101


>IMGA|Medtr2g014750.3 Metallo-dependent hydrolase, composite
           chr02_pseudomolecule_IMGAG_V3 3872068-3865685 E
           EGN_Mt090430 20090702
          Length = 504

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 66/106 (62%), Gaps = 10/106 (9%)

Query: 1   MDNLQWRIXXXXXXXXXXXXXXYVQNSS-KLSHGDCSLLPYKHYWITSKSIVTPQGIISG 59
           MD L WR+              Y+Q+   KL   +CSLLPY HYWI+SK I+T QG ISG
Sbjct: 1   MDQLLWRVLPLLTLLISFSLFFYLQSPIIKLPGDECSLLPYSHYWISSKRILTSQGFISG 60

Query: 60  AVEVKEGNIVSIVKEEDWQGYSKRG----PILDYGEAVVMPGLIDV 101
           +VE+ EG IVSIV     +GY K+      ++DYG+AVVMPGLIDV
Sbjct: 61  SVEINEGKIVSIV-----EGYGKKDNSVHQVIDYGDAVVMPGLIDV 101


>IMGA|Medtr2g014750.2 Urease, gamma/beta/alpha type
           chr02_pseudomolecule_IMGAG_V3 3875358-3865685 E
           EGN_Mt090430 20090702
          Length = 537

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 9/72 (12%)

Query: 34  DCSLLPYKHYWITSKSIVTPQGIISGAVEVKEGNIVSIVKEEDWQGYSKRG----PILDY 89
           +CSLLPY HYWI+SK I+T QG ISG+VE+ EG IVSIV     +GY K+      ++DY
Sbjct: 117 ECSLLPYSHYWISSKRILTSQGFISGSVEINEGKIVSIV-----EGYGKKDNSVHQVIDY 171

Query: 90  GEAVVMPGLIDV 101
           G+AVVMPGLIDV
Sbjct: 172 GDAVVMPGLIDV 183


>IMGA|Medtr2g014750.1 Dihydroorotase region
           chr02_pseudomolecule_IMGAG_V3 3875358-3865685 E
           EGN_Mt090430 20090702
          Length = 586

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 9/72 (12%)

Query: 34  DCSLLPYKHYWITSKSIVTPQGIISGAVEVKEGNIVSIVKEEDWQGYSKRG----PILDY 89
           +CSLLPY HYWI+SK I+T QG ISG+VE+ EG IVSIV     +GY K+      ++DY
Sbjct: 117 ECSLLPYSHYWISSKRILTSQGFISGSVEINEGKIVSIV-----EGYGKKDNSVHQVIDY 171

Query: 90  GEAVVMPGLIDV 101
           G+AVVMPGLIDV
Sbjct: 172 GDAVVMPGLIDV 183