Jatropha Genome Database

JcCB0224001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224001.20 + phase: 0 /partial
         (118 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g088630.1 Strictosidine synthase; TolB, C-terminal ch...    88   8e-19
IMGA|Medtr8g088510.1 Strictosidine synthase; TolB, C-terminal ch...    88   9e-19
IMGA|Medtr8g088590.1 ABC transporter related chr08_pseudomolecul...    70   2e-13
IMGA|Medtr2g049570.1 Strictosidine synthase; TolB, C-terminal ch...    55   6e-09
IMGA|Medtr2g049560.1 Strictosidine synthase; TolB, C-terminal ch...    54   2e-08
IMGA|Medtr2g049530.1 Strictosidine synthase; TolB, C-terminal ch...    54   2e-08
IMGA|Medtr8g088660.1 Strictosidine synthase; TolB, C-terminal ch...    50   4e-07

>IMGA|Medtr8g088630.1 Strictosidine synthase; TolB, C-terminal
           chr08_pseudomolecule_IMGAG_V3 18812317-18808704 E
           EGN_Mt090430 20090702
          Length = 375

 Score = 88.2 bits (217), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 4/118 (3%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
            P+ + T     A ++N  +  GSE +  G+L  PED+ YD + G++YT C DGWIKR  
Sbjct: 45  FPLEKQTRSTITAPLRNNNMRLGSENVADGELFGPEDLVYDADKGLMYTGCEDGWIKR-- 102

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLGL    +  +I+ADA KGLL+++R+ EIE+L  E +G
Sbjct: 103 --ISVNGSVVEDWINTGGRPLGLAFDGNGQLIIADADKGLLRVTREKEIEVLVTEIDG 158


>IMGA|Medtr8g088510.1 Strictosidine synthase; TolB, C-terminal
           chr08_pseudomolecule_IMGAG_V3 18777233-18774677 E
           EGN_Mt090430 20090702
          Length = 375

 Score = 88.2 bits (217), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 4/118 (3%)

Query: 1   MPIHELTDPPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXX 60
            P+ + T     A ++N  +  GSE +  G+L  PED+ YD + G++YT C DGWIKR  
Sbjct: 45  FPLEKQTRSTITAPLRNNNMRLGSENVADGELFGPEDLVYDADKGLMYTGCEDGWIKR-- 102

Query: 61  XXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
                          TGGRPLGL    +  +I+ADA KGLL+++R+ EIE+L  E +G
Sbjct: 103 --ISVNGSVVEDWINTGGRPLGLAFDGNGQLIIADADKGLLRVTREKEIEVLVTEIDG 158


>IMGA|Medtr8g088590.1 ABC transporter related
           chr08_pseudomolecule_IMGAG_V3 18791853-18789526 E
           EGN_Mt090430 20090702
          Length = 190

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 16  KNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXX 75
           KN RL  GSE    GQ+  PED+ YD   GV+YT C DGWIKR                 
Sbjct: 62  KNMRL--GSEKAAEGQVLGPEDLVYDAALGVVYTGCEDGWIKR----ITVNESVVEDWVN 115

Query: 76  TGGRPLGLVLGKDNDVIVADAYK 98
           TGGRPLGL    + D+IVADAYK
Sbjct: 116 TGGRPLGLAFDGNGDLIVADAYK 138


>IMGA|Medtr2g049570.1 Strictosidine synthase; TolB, C-terminal
           chr02_pseudomolecule_IMGAG_V3 13581903-13585508 E
           EGN_Mt090430 20090702
          Length = 372

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 21  LQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXXTGGRP 80
           LQ    LG G LK PED+  D ++GV+YT   DGWIKR                      
Sbjct: 63  LQNVIKLGEGFLKQPEDVCVD-KNGVLYTATRDGWIKRMVRNENWENWKHIDSSSL---- 117

Query: 81  LGLVLGKDNDVIVADAYKGLLKISRDG 107
           LG+   KD  +IV DA +GLLK++ DG
Sbjct: 118 LGITTSKDGGLIVCDASEGLLKVTEDG 144


>IMGA|Medtr2g049560.1 Strictosidine synthase; TolB, C-terminal
           chr02_pseudomolecule_IMGAG_V3 13575491-13579530 E
           EGN_Mt090430 20090702
          Length = 352

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 9   PPPEASMKNGRLLQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXX 68
           P   +S KN +L Q    LG G LK PED+  D + GV+YT   DGWIKR          
Sbjct: 33  PFSVSSTKNNQL-QSVIKLGEGFLKQPEDVCVDKD-GVLYTATRDGWIKRMVRNENWENW 90

Query: 69  XXXXXXXTGGRPLGLVLGKDNDVIVADAYKGLLKISRDG 107
                       LG+   KD  +IV D   GLLK++ DG
Sbjct: 91  KHID----SSSLLGITTSKDGGLIVCDTTLGLLKVTEDG 125


>IMGA|Medtr2g049530.1 Strictosidine synthase; TolB, C-terminal
           chr02_pseudomolecule_IMGAG_V3 13555691-13560610 E
           EGN_Mt090430 20090702
          Length = 360

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 21  LQGSEFLGVGQLKAPEDIAYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXXTGGRP 80
           LQ    LG G LK PED+  D + G++YT   DGWIKR                      
Sbjct: 51  LQNVIKLGEGFLKQPEDVCVD-KDGILYTATRDGWIKRMVRNGNWENWKHIDSSSL---- 105

Query: 81  LGLVLGKDNDVIVADAYKGLLKISRDGEIELLTDEAEG 118
           LG+   KD  +IV DA KGLLK++ +    ++  +  G
Sbjct: 106 LGITTSKDGGLIVCDATKGLLKVTEEEGFSVILSQVNG 143


>IMGA|Medtr8g088660.1 Strictosidine synthase; TolB, C-terminal
           chr08_pseudomolecule_IMGAG_V3 18828285-18826467 H
           EGN_Mt090430 20090702
          Length = 197

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 9/84 (10%)

Query: 39  AYDGESGVIYTTCADGWIKRXXXXXXXXXXXXXXXXXTGGRPLGLVLGKDNDVIVADAYK 98
           ++  E+  IY  C DGWIKR                 + GRPLGL L K  ++IVADA+ 
Sbjct: 36  SFPEEASYIYG-CEDGWIKRITVADSVVENWVH----SSGRPLGLALEKTGELIVADAHL 90

Query: 99  GLLKIS----RDGEIELLTDEAEG 118
           GLL+++    ++ ++E+L +E +G
Sbjct: 91  GLLRVTQKEGKEPKVEILANEHDG 114