Jatropha Genome Database
- JcCB0222931.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0222931.10 + phase: 0 /TE/partial
(785 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 203 2e-52
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 203 3e-52
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 203 3e-52
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 199 5e-51
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 195 6e-50
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 173 4e-43
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 140 2e-33
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 124 2e-28
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 124 2e-28
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 100 2e-21
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 82 2e-15
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 79 1e-14
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 75 1e-13
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 69 1e-11
IMGA|Medtr8g096240.1 hypothetical protein chr08_pseudomolecule_I... 67 4e-11
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 67 4e-11
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 64 3e-10
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 63 4e-10
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 62 8e-10
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 62 9e-10
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 61 3e-09
IMGA|Medtr7g116810.1 hypothetical protein chr07_pseudomolecule_I... 60 5e-09
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 59 7e-09
IMGA|AC233656_7.1 hypothetical protein AC233656.1 25072-25343 H ... 59 1e-08
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 57 5e-08
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 56 6e-08
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 54 2e-07
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 54 2e-07
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 54 3e-07
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 53 5e-07
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 52 8e-07
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 147/238 (61%), Gaps = 2/238 (0%)
Query: 367 SVCLFISLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYG 426
+V L I+LA+ W LHQLDV NAFLHGDLQE VY+ PPG I+ + VC+L KSLYG
Sbjct: 956 TVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYMTLPPG-ISAKHSNTVCKLNKSLYG 1014
Query: 427 LKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIA 486
LKQ+ R W+ + +++ + ++ SDHS+F + T TS G
Sbjct: 1015 LKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQ 1074
Query: 487 SLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAPM 546
+KS L T F+ KDLG LK+FLG+EV+ + GI L Q+KY L+LL +G +G+KP S P
Sbjct: 1075 YIKSILDTLFKIKDLGQLKFFLGLEVAHSQLGISLCQKKYCLDLLADSGTIGSKPASTPS 1134
Query: 547 TPNLQLSIGGKL-FDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIHWEA 603
P+L+L G L ++D+ Y+RL+G+L YL T PDI Y LSQF+S+PT H A
Sbjct: 1135 DPSLKLHKDGALPYEDIPSYRRLIGRLLYLNTTRPDITYITQQLSQFLSAPTHTHHSA 1192
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
+A + CE+ W+ LL+++ + L+CDNQ ALHIA+NPVFH+RTKH+EID H +RE
Sbjct: 1270 LASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVRE 1329
Query: 740 R 740
+
Sbjct: 1330 K 1330
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLFPSKLL 59
+K++H+L V AL Y ++ P +F L+ VFLINR+P+ L+ PY VLF
Sbjct: 651 ERKHQHILNVGRALLYQSKLPPSFWSYAILHA-VFLINRVPTHVLHNQSPYHVLFHK--- 706
Query: 60 FPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVT 119
+ D++L SKL P++ + +FLGY KGY F +S V
Sbjct: 707 -------------LPDIQLFKSKLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVI 753
Query: 120 FFEN 123
F EN
Sbjct: 754 FHEN 757
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 151/239 (63%), Gaps = 4/239 (1%)
Query: 367 SVCLFISLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPGF-IAQEELGKVCELRKSLY 425
+V L I+LA+ +W LHQLDV NAFLHG+LQE+VY+ PPG IA+ +VC+L+KSLY
Sbjct: 828 TVRLVIALASIHNWHLHQLDVNNAFLHGELQEDVYMILPPGINIAKPH--QVCKLKKSLY 885
Query: 426 GLKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGI 485
GLKQ+ R W+ + +V+ Q +++SDHS+F + + S G+
Sbjct: 886 GLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEF 945
Query: 486 ASLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAP 545
++KS L T F+ KDLG LKYFLGIEV+ K GI L QRKY L+LL +G +G+KP S P
Sbjct: 946 QNIKSILDTSFKIKDLGQLKYFLGIEVAHSKLGISLYQRKYCLDLLHDSGHIGSKPISTP 1005
Query: 546 MTPNLQLSIGGKL-FDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIHWEA 603
P+ +L +DD+ Y+RLVG+L YL T PDI + LSQF+S+PT+ H A
Sbjct: 1006 SDPSTKLHHDTSTPYDDIPAYRRLVGRLLYLNNTRPDITFITQQLSQFLSNPTIAHHNA 1064
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
+A + CEI W+ LL ++ S P L+CDNQ ALHIA+NPVFH+RTKH+EID H +RE
Sbjct: 1142 LASATCEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVRE 1201
Query: 740 R 740
+
Sbjct: 1202 K 1202
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVL---FPS 56
+K++H+L V AL + ++ P TF L+ VFLINR+ + L+ PY VL PS
Sbjct: 497 ERKHQHILNVVRALLFQSKLPPTFWSYAVLHA-VFLINRVSTPLLHNQSPYLVLHNKLPS 555
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
LF ++FGC C+ ++ +KL ++ + IFLGY KGY F IS
Sbjct: 556 LDLF----KVFGCLCYASTLQNHRTKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISR 611
Query: 117 DVTFFENT-PFFPSP 130
V+F E P+ +P
Sbjct: 612 HVSFHETILPYHKNP 626
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 143/238 (60%), Gaps = 2/238 (0%)
Query: 367 SVCLFISLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYG 426
+V I AA W +HQLDV NAFLHGDL EEVY++ PPG +A VC+L KSLYG
Sbjct: 425 TVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPG-LATPHKDLVCKLNKSLYG 483
Query: 427 LKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIA 486
LKQ+ R W+ + +H G S D+S+F++ S TG+D+ I
Sbjct: 484 LKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEID 543
Query: 487 SLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAPM 546
LK FL QF+ KDLG L YFLG+EV + GI +SQRK+VL+LLK P S+P+
Sbjct: 544 ELKRFLDNQFKIKDLGRLHYFLGLEVLYKDDGILVSQRKFVLDLLKEFNCDHMAPLSSPL 603
Query: 547 TPNLQL-SIGGKLFDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIHWEA 603
PN++L S GK+ DD Y++L+GKLN+LT T D+AY V +LSQ+M P H A
Sbjct: 604 DPNIKLRSHEGKVLDDPTYYRKLIGKLNFLTHTRLDLAYGVQLLSQYMQDPREPHLHA 661
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 148/238 (62%), Gaps = 2/238 (0%)
Query: 367 SVCLFISLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYG 426
+V L I+L++ +W LHQLDV NAFLHGDLQE+VY+ PPG I +L +VC+L KSLYG
Sbjct: 982 TVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVPPG-IKSSKLNQVCKLTKSLYG 1040
Query: 427 LKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIA 486
LKQ+ R W+ + +V+ ++TSD+S+F + T TS G+ + +
Sbjct: 1041 LKQASRKWYEKLTSVLFDQHYTQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFS 1100
Query: 487 SLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAPM 546
+KS L + F+ KDLG LKYFLGIEV+ K GI L QRKY L+LL G LG+KP S P
Sbjct: 1101 HIKSILDSLFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADIGSLGSKPISTPS 1160
Query: 547 TPNLQLSI-GGKLFDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIHWEA 603
+++L + F+D+ +RLVG+L YL T PDI + LSQF+S PT H A
Sbjct: 1161 DSSIKLHLDSSSPFEDVPACRRLVGRLLYLNNTRPDITFITQQLSQFLSQPTQAHHSA 1218
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 44/61 (72%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
+A + CE+ WI LL+++ L+CDNQ A+HIA+NPVFH+RTKH+EID H IR+
Sbjct: 1296 LASATCELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRD 1355
Query: 740 R 740
+
Sbjct: 1356 K 1356
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 21/139 (15%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCY-----VFLINRMPSSXLNGAIPYXVL- 53
+K++H+L V AL Y ++ P + +CY VFLINR+P+ LN PY VL
Sbjct: 657 ERKHQHILNVGRALLYQSKLPPAY------WCYAIQHAVFLINRVPTPTLNNQSPYFVLH 710
Query: 54 --FPSKLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDR 111
P LF ++FGC C+ ++ +KL ++ + IF+GY KG+ +
Sbjct: 711 HKLPDSSLF----KVFGCLCYASTLQSHTTKLKHRARKSIFIGYQSGYKGFTLYDLHSRE 766
Query: 112 YLISVDVTFFENTPFFPSP 130
IS VTF EN F P P
Sbjct: 767 IFISRHVTFHEN--FLPYP 783
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 2/238 (0%)
Query: 367 SVCLFISLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYG 426
+V I+LA +W +HQLDV NAFLHGDLQE+VY+ P G I + +VC+L KSLYG
Sbjct: 973 TVRTIIALAYMNNWHIHQLDVNNAFLHGDLQEDVYMIVPQG-ITPSKSNQVCKLIKSLYG 1031
Query: 427 LKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIA 486
LKQ+ R W+ + +++ +STSDHS+F + T TS TG+ +
Sbjct: 1032 LKQASRKWYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQ 1091
Query: 487 SLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAPM 546
+K+ L + + KDLG LKYFLG+EV+ +GI L QRKY L+LL G L AKP S P
Sbjct: 1092 DIKAILHSALEIKDLGQLKYFLGLEVAHSSQGISLCQRKYCLDLLTDIGFLAAKPASTPS 1151
Query: 547 TPNLQL-SIGGKLFDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIHWEA 603
P+ +L + GG F D+ Y+RL+G+L YLT T P I ++ LSQF++SPT H+ A
Sbjct: 1152 DPSCKLHADGGPPFSDIPSYRRLIGRLIYLTNTRPYITFATQQLSQFLNSPTEKHYIA 1209
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
+ + CE+ W+ LL ++ + L+CDNQ ALHIA+NPVFH+RTKH+EID H +RE
Sbjct: 1287 LGAATCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVRE 1346
Query: 740 R 740
+
Sbjct: 1347 K 1347
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVL---FPS 56
+K++H+L V AL + ++ P ++ L+ +F+INR+ S L+ PY +L P
Sbjct: 640 ERKHQHILNVGRALLFQSKLPSSYWSYALLHA-IFIINRVTSPTLHNKSPYQLLHGTIPD 698
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
F ++FG C+ ++ +KL ++ + +FLGY+ KGY IS
Sbjct: 699 VQTF----KVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGYKGYVLLDIHTREIHISR 754
Query: 117 DVTFFENTPFFPS 129
V F E+ +P+
Sbjct: 755 HVQFHEHILPYPT 767
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 2/219 (0%)
Query: 367 SVCLFISLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYG 426
+V I+LA+ W LHQ DV NAFLHG+LQE+VY+ PPG + +VC+L KSLYG
Sbjct: 74 TVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSHQDEVCKLNKSLYG 132
Query: 427 LKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIA 486
L+Q+ W+ + N++ G ++ SD S+F + T +S G +
Sbjct: 133 LQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVDDVILAGDTLSEFN 192
Query: 487 SLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAPM 546
++K L F+ KD+G LKYFLG+EV+ K GI L QRKY L+LL+ +G G+KP + P
Sbjct: 193 TIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLEDSGLTGSKPMNTPS 252
Query: 547 TPNLQL-SIGGKLFDDLEMYKRLVGKLNYLTVTSPDIAY 584
P+++L + F D+ Y+RL+G+L YL T PDI Y
Sbjct: 253 DPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITY 291
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 138/274 (50%), Gaps = 40/274 (14%)
Query: 479 GSDSAGIASLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLG 538
G+D+ I + K +L+ F KDLG LKYFLG+E++ G+F+ QRKY L++L L
Sbjct: 14 GNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRKYTLDILDECKMLD 73
Query: 539 AKPCSAPMTPNLQLSIG-GKLFDDLEMYKRLVGKLNYLTVTSPDIAYSVS-----VLSQF 592
KP + PM N +L + G D Y+RL+ +L YLT+ P+I YSV VL
Sbjct: 74 CKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITYSVHILTMRVLRYL 133
Query: 593 MSSPT--VIHWEAXDKFCARXKVIQVVAS-----FTVIMGIWTLSVFRMRIGQVRRLIED 645
SSP +I + D +Q+VA + + + S + M++G +
Sbjct: 134 KSSPGQGIILPKEND--------LQLVAYCDSDWASCPLTRRSTSGYLMKLGSAPISWKT 185
Query: 646 XLQDIVSLWV-ETXYRGGARNKIXSHDRVLNXNIEMAQSACEIIWIRQLLEEIGFKSSLP 704
Q VS E YR M Q+ E+IW+R LL + P
Sbjct: 186 KKQSTVSKSSSEAEYRA------------------MGQAVSEVIWLRSLLSSLQVHYDSP 227
Query: 705 AKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIR 738
L CDNQ A+H+A+NPV+H+RTKHIE+D HFIR
Sbjct: 228 TVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIR 261
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 1/178 (0%)
Query: 427 LKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIA 486
++ + R W+ + +++ G ++++DHS+F + + T G+
Sbjct: 382 IRLASRKWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFT 441
Query: 487 SLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAPM 546
+K+ L F+ KDLG LKYFLG+EV+ K GI L QRKY L+LL TG L +KP + P
Sbjct: 442 FIKNILHNSFKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPS 501
Query: 547 TPNLQL-SIGGKLFDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIHWEA 603
P+++L L+ D+ Y+RLVG+L YL T PDI + LSQF+S PT H+ A
Sbjct: 502 DPSIKLYHDDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNA 559
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLF---PS 56
+K++H+L + AL Y ++ P +F L+ VFLINR+P+ L+ PY +L+ P
Sbjct: 49 ERKHQHILNIGRALLYQSKLPLSFWSYAFLHA-VFLINRIPTPVLHNFSPYHLLYDSPPD 107
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
F ++FGC C+ ++ +KL+ ++ + +FLGY KGY + IS
Sbjct: 108 ITTF----KVFGCLCYASSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISR 163
Query: 117 DVTFFE 122
V F E
Sbjct: 164 HVVFHE 169
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 108/222 (48%), Gaps = 42/222 (18%)
Query: 380 WTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYGLKQSPRAWFGRFC 439
W D N FLHGDLQE+VY+ P G ++ G+VC+L KSLYGLKQ+ R WF +
Sbjct: 198 WIFRLNDANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLI 256
Query: 440 NVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTGSDSAGIASLKSFLQTQFQTK 499
+++ G ++++DHS R++ TS
Sbjct: 257 SLLLTIGFVQASADHSFLIRASPTSFTA-------------------------------- 284
Query: 500 DLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKLGAKPCSAPMTPNLQLSI-GGKL 558
L I V+ +GI L QRKY L+LL G K S P+ L I G
Sbjct: 285 --------LLIYVAHSSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPP 336
Query: 559 FDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLSQFMSSPTVIH 600
FDD+ Y+ L+G L YLT T PDI+++ LSQFM+ P+V H
Sbjct: 337 FDDVLAYRCLIGCLLYLTTTRPDISFATQQLSQFMAKPSVNH 378
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 32/37 (86%)
Query: 707 LWCDNQVALHIASNPVFHKRTKHIEIDFHFIRERYNK 743
L+CDNQ ALHIA+NPVF++RTKH++ID H +RE+ +
Sbjct: 462 LYCDNQSALHIAANPVFYERTKHLDIDCHIVREKVQR 498
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 456 VFFRSTKTSXXXXXXXXXXXXXTGSDSAGIASLKSFLQTQFQTKDLGLLKYFLGIEVSWC 515
+F + T +S G+ + +KS L + F+ KDLG LKY LG+EV+
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 516 KRGIFLSQRKYVLELLKXTGKLGAKPCSAPMTPNLQL-SIGGKLFDDLEMYKRLVGKLNY 574
K+GI L QRKY L+LL +G + +KP S +L+L + ++D+ Y+RL+G+L Y
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLY 120
Query: 575 LTVTSPDIAYSVSVLSQFMSSPTVIHWEA 603
L T PDI + LSQF+S PT H A
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNA 149
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 478 TGSDSAGIASLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFLSQRKYVLELLKXTGKL 537
+G DS GI LK FL F+ KDL L YFLG+E +FLSQ KY +L+ G
Sbjct: 4 SGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQAGLT 63
Query: 538 GAKPCSAPMTPNLQLS-IGGKLFDDLEMYKRLVGKLNYLTVTSPDIAYSVSVLS 590
K + PN+Q + G L DD +Y VG L YLT T P+I+Y V ++S
Sbjct: 64 DCKIEYTRLEPNIQFTPQDGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 59/102 (57%)
Query: 420 LRKSLYGLKQSPRAWFGRFCNVVHQFGMXKSTSDHSVFFRSTKTSXXXXXXXXXXXXXTG 479
LRKSLYGLKQ+ R W+ + + ++G +S +DHS+F S ++ G
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAG 64
Query: 480 SDSAGIASLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRGIFL 521
+D+ I + K +L+ F KDLG LKYFLG+E++ G+F+
Sbjct: 65 NDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
MA + CEI W+ LL++ + PA L+CD+Q A HIA+N FH+RTKHIE+D H +RE
Sbjct: 261 MATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHERTKHIELDCHIVRE 320
Query: 740 RYNKVL 745
+ + L
Sbjct: 321 KLQQKL 326
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
+AQ+ E WI L++ S P ++CDN ++HI +NPVFH+RTKHIEID H +R+
Sbjct: 4 LAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVVRD 63
Query: 740 R 740
+
Sbjct: 64 K 64
>IMGA|Medtr8g096240.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 21119820-21118370 E
EGN_Mt090430 20090702
Length = 93
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 379 DWTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGK-VCELRKSLYGLKQSPRAWFGR 437
++ LHQLD+K+AF GD+ E+VYIE PP FIAQ +L V L K+ Y LKQS RAW +
Sbjct: 26 NYVLHQLDIKHAFQFGDVIEKVYIEPPPRFIAQGDLCDFVYRLYKASYNLKQSLRAWSDK 85
Query: 438 FCNVVHQF 445
V+ +F
Sbjct: 86 VSAVLQKF 93
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRE 739
+A + CE+ + LL ++ P L+CDNQ A++IA+NPVFH+ TKH+EID H +RE
Sbjct: 62 LASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFHECTKHLEIDCHIVRE 121
Query: 740 R 740
+
Sbjct: 122 K 122
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 385 LDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYGLKQSPRAWFGR 437
+DV NAFLHGDLQE+VY++ P GF VC+LRKS Y LK +P+ WF +
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSS-RLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLF---PS 56
+K++H+L + AL Y ++ P +F L+ VFLINR+ + L+ PY +L+ P
Sbjct: 142 ERKHQHILNIGRALLYQSKLPLSFWSYAFLHA-VFLINRITTPVLHNFSPYHLLYDSPPD 200
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
F ++FGC C+ ++ ++KL+ ++ + +FLGY KGY + IS
Sbjct: 201 ITTF----KVFGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISR 256
Query: 117 DVTFFE 122
V F E
Sbjct: 257 HVVFHE 262
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 478 TGSDSAGIASLKSFLQTQFQTKDLGLLKYFLGIEVSWCKRG-IFLSQRKYVLELLKXTGK 536
TG+++ + L S L + F KDLG LKYFLGIEV G + ++Q KYV +LL T
Sbjct: 11 TGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKYVRDLLAKTDM 70
Query: 537 LGAKPCSAPMTPNLQLSIGGKL-FDDLEMYKRLVGKLNYLTVTSP 580
AK +PM +L+LS G F D + + +V L Y + P
Sbjct: 71 QEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP 115
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 680 MAQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFI 737
MA + CE+ WI+ LL ++ P L C++Q ALHIA VFH RTK+I++D HFI
Sbjct: 1 MANTTCELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFI 58
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 34/41 (82%)
Query: 367 SVCLFISLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPG 407
++ L ++LA+ +W LHQLDV NAFLHGDLQE+VY++ PPG
Sbjct: 1001 TIRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYMDIPPG 1041
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLF---PS 56
+K++H+L + AL Y ++ P +F L+ VFLINR+P+ L PY +L+ P
Sbjct: 668 ERKHQHILNIGRALLYQSKLPLSFWSYAFLHA-VFLINRVPTLVLQNQSPYQLLYDSSPD 726
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
F ++FGC C+ ++ +KL+ ++ + +FLGY KG + IS
Sbjct: 727 VTTF----KVFGCLCYASSLQSHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISR 782
Query: 117 DVTFFE 122
V F E
Sbjct: 783 HVVFHE 788
>IMGA|Medtr7g116810.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 27118605-27118065 H
EGN_Mt090430 20090702
Length = 141
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 65 RIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVD 117
+IFGCT FV SKLDP++L+C+F+GYS QKGY C+ P +Y ++
Sbjct: 10 KIFGCTSFVYIQSDGRSKLDPRALKCVFIGYSSTQKGYICYHPPSHKYFAKIE 62
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 681 AQSACEIIWIRQLLEEIGFKSSLPAKLWCDNQVALHIASNPVFHKRTKHIEIDFHFIRER 740
+ +AC+ W++ +LE+ K P KL DN+ A+++A N + H ++KHIE FH++R++
Sbjct: 495 SSAACQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQ 554
Query: 741 YNK 743
NK
Sbjct: 555 VNK 557
>IMGA|AC233656_7.1 hypothetical protein AC233656.1 25072-25343 H
EGN_Mt090430 20090702
Length = 73
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 16/70 (22%)
Query: 373 SLAATFDWTLHQLDVKNAFLHGDLQEEVYIEQPPGFIAQEELGKVCELRKSLYGLKQSPR 432
S A+ +W L+Q + KNAFL GDL ++VYI EL+K+LY LKQS R
Sbjct: 20 SGASLHNWLLYQFNFKNAFLQGDLVDKVYI----------------ELQKALYNLKQSLR 63
Query: 433 AWFGRFCNVV 442
WFGRF +
Sbjct: 64 TWFGRFSTTL 73
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLF---PS 56
+K++H+L + AL Y ++ P +F L+ VFLINR+P+ L PY +L+ P
Sbjct: 668 ERKHQHILNIGRALLYQSKLPLSFWSYAFLHA-VFLINRVPTLVLQNQSPYQLLYDSSPD 726
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGY 95
F ++FGC C+ ++ +KL+ ++ + +FLGY
Sbjct: 727 VTTF----KVFGCLCYASSLQSHRTKLETRARKSVFLGY 761
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVL---FPS 56
+K++H+L V AL Y ++ P ++ L+ F+INR+ S L+ PY +L P+
Sbjct: 648 ERKHQHILNVGRALLYQSKLPVSYWSYALLHA-TFIINRVTSPTLHNKSPYQLLHDTIPA 706
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
+ +F ++FG C+ + +KL ++ + +FLGY+ KGY IS
Sbjct: 707 EHIF----KVFGSLCYSTTLHSHRTKLSARARKSVFLGYTVGFKGYVLLDIHTREIHISR 762
Query: 117 DVTFFENTPFFPS 129
V F+E+ +P+
Sbjct: 763 HVQFYEHILPYPA 775
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLF---PS 56
+K++H+L VA AL + ++ P F L+ +++INR+P+ L PY + + P
Sbjct: 621 ERKHQHILNVARALLFQSKLPKVFWSYSVLHA-IYIINRIPTPLLQNKSPYFLRYGHDPD 679
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
F ++FGC + + +K D ++ +C+FLGY KG + + S
Sbjct: 680 LNNF----KVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASR 735
Query: 117 DVTFFENT-PFFPSPIY 132
+VT+ E+ P+ S Y
Sbjct: 736 NVTYHEHILPYSNSKQY 752
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 33 VFLINRMPSSXLNGAIPYXVLFPSKLLFPVKP-RIFGCTCFVRDVRLQVSKLDPKSLRCI 91
VFLINR+P+ L PY VL+ K L + ++FGC C+ ++ +KL ++ + +
Sbjct: 598 VFLINRVPTLVLENKSPYQVLY--KTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKSV 655
Query: 92 FLGYSWHQKGYRCFSPDLDRYLISVDVTFFE 122
FLGY KG + + +S +VTF E
Sbjct: 656 FLGYKSGYKGSFLYDLNTKEIFMSRNVTFHE 686
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLF---PS 56
+K++H+L VA AL + ++ P F L+ +++INR+P+ L PY + + P
Sbjct: 691 ERKHQHILNVARALLFQSKLPKIFWSYSVLHA-IYIINRIPTPLLQNKSPYFLRYGHDPD 749
Query: 57 KLLFPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGYSWHQKGYRCFSPDLDRYLISV 116
F ++FGC + + +K D ++ +C+FLGY KG + + S
Sbjct: 750 LNNF----KVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASR 805
Query: 117 DVTFFEN 123
+VT+ E+
Sbjct: 806 NVTYHEH 812
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 402 IEQPPGFIAQEELGKVCELRKSLYGLKQSPRAWFGRFCNVVHQFGMXKSTSDHSVF 457
+ QP GF+ + +VC+LRKSLYGLKQ+P+AWF + + + SD S+F
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLF 56
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 1 RKKNRHLLEVAMAL-YSNEGPXTFLGGCXLYCYVFLINRMPSSXLNGAIPYXVLFPSKLL 59
++++H+L ++ AL + ++ P F L+ V+LINR+P+ LN Y VL+ +++
Sbjct: 693 ERRHQHILNISRALMFQSKLPKNFWSYAVLHA-VYLINRIPTKILNNKSSYEVLY-NEVP 750
Query: 60 FPVKPRIFGCTCFVRDVRLQVSKLDPKSLRCIFLGY 95
++FGC + + + K DPK+ +C FLG+
Sbjct: 751 DLSSLKVFGCLSYASTLPVNRYKFDPKARKCAFLGF 786