Jatropha Genome Database

JcCB0218961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0218961.10 + phase: 2 /partial
         (699 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g102410.1 Fe-S metabolism associated SufE chr03_pseud...   163   3e-40
IMGA|AC233100_36.1 BolA-like protein; Fe-S metabolism associated...    70   3e-12

>IMGA|Medtr3g102410.1 Fe-S metabolism associated SufE
           chr03_pseudomolecule_IMGAG_V3 24960463-24959324 F
           EGN_Mt090430 20090702
          Length = 194

 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 101/137 (73%), Gaps = 1/137 (0%)

Query: 77  VPDKLLHLITEFQSITEPINRVKRVIHYASLLAPFPESSRVDSNRVMGCTARVWLDAQLD 136
           V DKL +L  EF S++EPI+RVKR++HYASLL P   S RV  NRV GC+  VW+ A +D
Sbjct: 58  VTDKLNNLTIEFSSLSEPIDRVKRLLHYASLLPPLDRSDRVPENRVTGCSTDVWVVAHID 117

Query: 137 RYGKMRFLADSDSEITRGFCACLLSVLDGAAPEEVLSVKTENLAALNVGLPGGE-RSRVN 195
           +  +MRF ADSDSEI++GFC CL+ + DGA PEEVL+V+ + L  +NVGL   + RSR+N
Sbjct: 118 KGRRMRFQADSDSEISKGFCWCLVWMFDGAEPEEVLNVEKDVLVGMNVGLNNVKARSRIN 177

Query: 196 TWHNVLVSMQKRTRKLV 212
           TWHNV  +MQK T+ L+
Sbjct: 178 TWHNVFFAMQKATQDLI 194


>IMGA|AC233100_36.1 BolA-like protein; Fe-S metabolism associated
           SufE AC233100.6 121683-123592 E EGN_Mt090430 20090702
          Length = 329

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 84  LITEFQSITEPINRVKRVIHYASLLAPFPESSRVDSNRVMGCTARVWLDAQLDRYGKMRF 143
           ++  FQS+ EP  + ++++ Y   L P     +   N+V GC ++VW+ A LD    + +
Sbjct: 58  IVNLFQSVQEPKAKYEQLLFYGKNLKPLESQFKTKDNKVEGCVSQVWVRAYLDGDKNVVY 117

Query: 144 LADSDSEITRGFCACLLSVLDGAAPEEVLSVKTENLAALNVGLPGG-ERSRVNTWHNVLV 202
            ADSDS +T+G  A L+    G    E++ V  +    +++GL      SR N + N+L 
Sbjct: 118 EADSDSVLTKGLAALLVQGFSGRPVNEIIRVTPD--FVMHLGLQQSLTPSRNNGFLNMLK 175

Query: 203 SMQKRTRKLVAERE 216
            MQK+   L  E E
Sbjct: 176 LMQKKALMLYVEAE 189