Jatropha Genome Database

JcCB0217501.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0217501.10 + phase: 1 /pseudo/partial
         (345 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117560.1 2Fe-2S ferredoxin, iron-sulfur binding site...   447   e-126
IMGA|Medtr5g094520.1 2Fe-2S ferredoxin, iron-sulfur binding site...   130   8e-31
IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site...   116   1e-26

>IMGA|Medtr2g117560.1 2Fe-2S ferredoxin, iron-sulfur binding site;
            Xanthine dehydrogenase, small subunit; Carbon-monoxide
            dehydrogenase, large subunit
            chr02_pseudomolecule_IMGAG_V3 27646570-27659065 E
            EGN_Mt090430 20090702
          Length = 1358

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/271 (76%), Positives = 238/271 (87%), Gaps = 2/271 (0%)

Query: 42   QETNFQGDGSITHYGQQLQYCTLTQLWNELKLSCNLMKAREDTKQYNLHNRWKKRGVALV 101
            +E NFQG+GSI HYGQ L++C L+QLWNELKLSC+ +K RE+  ++N HNRW+KRG+A++
Sbjct: 968  KEINFQGEGSILHYGQILEHCPLSQLWNELKLSCDFVKTREEVDKFNAHNRWRKRGIAMI 1027

Query: 102  PTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAASVFNIPLSSV 161
            PTKFGISFTTKFMNQAGALV+VYTDGTVLVTHGGVEMGQGLHTKVAQIAAS FNIPLSSV
Sbjct: 1028 PTKFGISFTTKFMNQAGALVNVYTDGTVLVTHGGVEMGQGLHTKVAQIAASAFNIPLSSV 1087

Query: 162  FISETSTDKVPNXXXXXXXXXXDMYGAAVLDACEQIKARMEPVASKHNFSSFAELASACY 221
            FISETSTDKVPN          DMYG AVLDACEQIKARMEP+AS+HNF+SFAEL +ACY
Sbjct: 1088 FISETSTDKVPNSSPTAASASSDMYGGAVLDACEQIKARMEPIASRHNFASFAELVNACY 1147

Query: 222  IQRIDLSAHGFYITPEIGFDWSTGKGNPFRYYTYGAAFAEVEIDTLTGDFHTRAADVILD 281
            ++RIDLSAHGFYITP+I FDW TGKGNPF Y+TYGAAFAEVEIDTLTGDFHTRAA++ILD
Sbjct: 1148 MERIDLSAHGFYITPDINFDWITGKGNPFSYFTYGAAFAEVEIDTLTGDFHTRAANIILD 1207

Query: 282  LGYSLNPAIDVGQV--PFFLGLPFXAMHDLE 310
            LGYSLNPAIDVGQ+   F  GL + A+ +L+
Sbjct: 1208 LGYSLNPAIDVGQIEGAFIQGLGWVALEELK 1238


>IMGA|Medtr5g094520.1 2Fe-2S ferredoxin, iron-sulfur binding site;
            Xanthine dehydrogenase, small subunit; Carbon-monoxide
            dehydrogenase, large subunit
            chr05_pseudomolecule_IMGAG_V3 37404021-37397275 E
            EGN_Mt090430 20090702
          Length = 1320

 Score =  130 bits (328), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 134/271 (49%), Gaps = 30/271 (11%)

Query: 56   GQQLQYCTLTQLWNELKLSCNLMKAREDTKQYNLHNRWKKRGVALVPTKFGISFTTKFMN 115
            G+ L+Y T+  +WN+L +S N     +  K++N  N WKK+G++ +P  F +S     + 
Sbjct: 1002 GEPLEY-TMPLIWNKLAVSANYEPRVDKVKEFNRLNIWKKKGISRIPVLFELS-----LR 1055

Query: 116  QAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAASVFNIP--------LSSVFISETS 167
                 V + +DG+V+V  GG+EMGQGL TKV Q+AA              L  V + ++ 
Sbjct: 1056 PTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALGTIQCNGTESLLDKVRVVQSD 1115

Query: 168  TDKVPNXXXXXXXXXXDMYGAAVLDACEQIKARMEPVA----SKHNFSSFAELASACYIQ 223
            T  +            +   AAV  +C  +  R++P+      K +   + +L    Y+Q
Sbjct: 1116 TLSMIQGGLTAGSTTSEASCAAVRLSCNTLVERLQPIKKQLQEKKSSIKWEDLILQAYMQ 1175

Query: 224  RIDLSAHGFYITPEIGFDWSTGKGNPFRYYTYGAAFAEVEIDTLTGDFHTRAADVILDLG 283
             ++LS   +++             N  +Y  YGAA +EVEID LTG+      D+I D G
Sbjct: 1176 AVNLSDSSYFVP----------GSNSVKYINYGAAVSEVEIDLLTGETRFLQTDIIYDCG 1225

Query: 284  YSLNPAIDVGQV--PFFLGLPFXAMHDLEVH 312
             SLNPA+D+GQ+   F  GL F  + + E +
Sbjct: 1226 QSLNPAVDLGQIEGAFIQGLGFFMLEEYETN 1256


>IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site;
            Xanthine dehydrogenase, small subunit; Carbon-monoxide
            dehydrogenase, large subunit
            chr05_pseudomolecule_IMGAG_V3 37388580-37380627 H
            EGN_Mt090430 20090702
          Length = 1356

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 126/261 (48%), Gaps = 29/261 (11%)

Query: 56   GQQLQYCTLTQLWNELKLSCNLMKAREDTKQYNLHNRWKKRGVALVPTKFGISFTTKFMN 115
            G+  +Y TL  +W++L ++ N  +  +  K++N  + WKK+G++ +P    ++     + 
Sbjct: 1002 GEPFEY-TLPSIWSKLAVAANYEQRIKMVKEFNRISTWKKKGISRIPVVIQLT-----LR 1055

Query: 116  QAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQIAASVFNIPLSSVFISETSTDKVPNXX 175
                 V + +DG+V+V  GG+E+GQGL TKV Q+AA    +        +  T  +    
Sbjct: 1056 PTPGKVSILSDGSVVVEVGGIEIGQGLWTKVKQMAAFAPRV-------VQADTVSLIQGG 1108

Query: 176  XXXXXXXXDMYGAAVLDACEQIKARMEPVASKHNFS----SFAELASACYIQRIDLSAHG 231
                    +    AV  +C  +  R++P+  K         +  L    Y+Q ++LSA  
Sbjct: 1109 FTAGSTTSEASCEAVRLSCNILVERLKPLKEKLQEEMGSIKWETLILQAYMQSVNLSASS 1168

Query: 232  FYITPEIGFDWSTGKGNPFRYYTYGAAFAEVEIDTLTGDFHTRAADVILDLGYSLNPAID 291
            FY+             N   Y  YGAA +EVEID LTG+      D+I D G SLNPA+D
Sbjct: 1169 FYVP----------SNNSMMYVNYGAAVSEVEIDLLTGETKFLQTDIIYDCGQSLNPAVD 1218

Query: 292  VGQV--PFFLGLPFXAMHDLE 310
            +GQ+   F  GL F  + + E
Sbjct: 1219 LGQIEGAFVQGLGFFMLEEYE 1239