Jatropha Genome Database

JcCB0217351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0217351.10 + phase: 0 /partial
         (158 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g016230.1 Zinc finger, B-box; CCT chr01_pseudomolecul...   103   3e-23
IMGA|Medtr8g128200.1 Zinc finger, B-box; CCT chr08_pseudomolecul...    94   3e-20
IMGA|Medtr3g138670.1 Zinc finger, B-box; CCT chr03_pseudomolecul...    76   8e-15
IMGA|Medtr4g041790.1 Zinc finger, B-box; CCT chr04_pseudomolecul...    76   8e-15

>IMGA|Medtr1g016230.1 Zinc finger, B-box; CCT
           chr01_pseudomolecule_IMGAG_V3 3096189-3098130 E
           EGN_Mt090430 20090702
          Length = 316

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 19/146 (13%)

Query: 15  HQQYRNFQLGLEFDSSKP-TYSYNGSVSISSMDVGVVQD-STMSEIS-ISHSRTPKGTID 71
           H+ Y +  + ++F +SKP TY++N +VS  SMDVGVV D + M+EIS  S+  T   T  
Sbjct: 186 HEHYSD--INIDFSNSKPFTYNFNHTVSSPSMDVGVVPDGNVMTEISYCSYQTTATETA- 242

Query: 72  LFSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKR 131
                PM +   ++  +REARV+RY            IRYASRKAYAETRPRIKGRFAKR
Sbjct: 243 -----PMTVAVPMTAVEREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKR 297

Query: 132 TDVDFEVDQMFSTTLMTETGYSIVPS 157
           +D++          L+ E  Y +VPS
Sbjct: 298 SDLNMN--------LIAEDEYGVVPS 315


>IMGA|Medtr8g128200.1 Zinc finger, B-box; CCT
           chr08_pseudomolecule_IMGAG_V3 29899260-29897234 E
           EGN_Mt090430 20090702
          Length = 375

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 98/166 (59%), Gaps = 23/166 (13%)

Query: 11  MINHHQQYRNFQLGLEFDSSK------PTYSYNGSVSISSMDVGVVQD-STMSEISI--- 60
           M+NH+ +       ++F  SK      P++S + SVS SS+DVGVV D +T+SEIS    
Sbjct: 215 MMNHNSEG---CFDIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDGNTVSEISYNFG 271

Query: 61  SHSRTPKGTIDLFSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAET 120
           S S    G      G  +Q  +QL   DREARV+RY            IRYASRKAYAET
Sbjct: 272 SESMVSGGVNSSNQG--VQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAET 329

Query: 121 RPRIKGRFAKRTDVDFEVDQMFS--------TTLMTETGYSIVPSF 158
           RPRIKGRFAKRT++D +VD++++        ++++ +  Y +VP+F
Sbjct: 330 RPRIKGRFAKRTEIDSDVDRLYNPADPLSVPSSMLMDCPYGVVPTF 375


>IMGA|Medtr3g138670.1 Zinc finger, B-box; CCT
           chr03_pseudomolecule_IMGAG_V3 35482669-35481504 F
           EGN_Mt090430 20090702
          Length = 290

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 61/114 (53%), Gaps = 31/114 (27%)

Query: 45  MDVGVVQDS-TMSEISISHSRTPKGTIDLFSGPPMQMPSQLSPRDREARVLRYXXXXXXX 103
           MDVGVV D+ T+ EIS        GT+ +               DREARV+RY       
Sbjct: 206 MDVGVVPDANTVPEIS----NCGYGTVAV---------------DREARVMRYREKRKNR 246

Query: 104 XXXXXIRYASRKAYAETRPRIKGRFAKRTDVDFEVDQMFSTTLMTETGYSIVPS 157
                IRYASRKAYAETRPRIKGRFAKRTD    VD +        +GY +VP+
Sbjct: 247 RFEKTIRYASRKAYAETRPRIKGRFAKRTDA---VDSI--------SGYGVVPT 289


>IMGA|Medtr4g041790.1 Zinc finger, B-box; CCT
           chr04_pseudomolecule_IMGAG_V3 9967580-9968745 F
           EGN_Mt090430 20090702
          Length = 290

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 61/114 (53%), Gaps = 31/114 (27%)

Query: 45  MDVGVVQDS-TMSEISISHSRTPKGTIDLFSGPPMQMPSQLSPRDREARVLRYXXXXXXX 103
           MDVGVV D+ T+ EIS        GT+ +               DREARV+RY       
Sbjct: 206 MDVGVVPDANTVPEIS----NCGYGTVAV---------------DREARVMRYREKRKNR 246

Query: 104 XXXXXIRYASRKAYAETRPRIKGRFAKRTDVDFEVDQMFSTTLMTETGYSIVPS 157
                IRYASRKAYAETRPRIKGRFAKRTD    VD +        +GY +VP+
Sbjct: 247 RFEKTIRYASRKAYAETRPRIKGRFAKRTDA---VDSI--------SGYGVVPT 289