Jatropha Genome Database

JcCB0216511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216511.10 - phase: 0 
         (67 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g067080.1 Homocysteine S-methyltransferase chr05_pseu...    77   2e-15

>IMGA|Medtr5g067080.1 Homocysteine S-methyltransferase
          chr05_pseudomolecule_IMGAG_V3 23774075-23769436 E
          EGN_Mt090430 20090702
          Length = 326

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 7  DTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          +  S + D ++  GG  V DGGFAT+LE+HGA +NDPLWSA CLI  PHL++KV   +L
Sbjct: 4  EKKSLLQDLIENSGGCVVTDGGFATQLEKHGAFINDPLWSAICLIKQPHLIKKVHMEYL 62